PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01337-augustus-gene-0.35-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GRAS
Protein Properties Length: 674aa    MW: 76749.5 Da    PI: 6.0317
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01337-augustus-gene-0.35-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS240.38.3e-743325691240
                                           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal 64 
                                                    l++lL+ cAeav+++d++ a++lL++++++as  gd mqR+a+yf+++L+ar+a+s++++ykal
  maker-scaffold01337-augustus-gene-0.35-mRNA-1 332 LRTLLTLCAEAVAADDQRTATKLLKQIRQHASLVGDGMQRMAHYFANGLQARIAGSGTQIYKAL 395
                                                    5789************************************************************ PP

                                           GRAS  65 ppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaL 128
                                                     +++ts    +++ +a++l++ ++P++k+ +l   ++I++ ve+e+r+Hi+Df+i +Gl Wp+L
  maker-scaffold01337-augustus-gene-0.35-mRNA-1 396 MTRRTS---AADVWKAHHLYYTAFPFYKIINLFSSKTIMNLVENETRLHIVDFGILYGLRWPSL 456
                                                    **9999...99***************************************************** PP

                                           GRAS 129 lqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                                                    +q+L++Rp+g+p+lRiTg++ + +g   ++++eetg+rLa++Ae+++v+fefn+ +a+r+++++
  maker-scaffold01337-augustus-gene-0.35-mRNA-1 457 IQQLSARPGGAPKLRITGIDFALPGfqPAQRVEETGRRLAHYAETFNVQFEFNA-IAQRWDTIQ 519
                                                    *********************8888999**************************.7******** PP

                                           GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvv 240
                                                    +e+L+++++E+l+Vn++ +l +llde+v +es+r+ vL+l+++++P v++
  maker-scaffold01337-augustus-gene-0.35-mRNA-1 520 IEDLKLDNNEVLVVNCMNKLNYLLDETVVVESPRQLVLNLIRKMNPYVFI 569
                                                    **********************************************9987 PP
2GRAS76.93.6e-24575671278374
                                           GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341
                                                    ++ er+++E e  gr+++nv+aceg+er+er et+++W+ r  +aGFk+++l+++++++ak  l
  maker-scaffold01337-augustus-gene-0.35-mRNA-1 575 AAYERMVIESESCGRKAMNVIACEGSERIERPETYKQWQLRHLRAGFKQLHLNQEMMNTAKDWL 638
                                                    5579************************************************************ PP

                                           GRAS 342 rkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                                    + ++ + + +eees++l++gWk+ +++++S+Wr
  maker-scaffold01337-augustus-gene-0.35-mRNA-1 639 KSCYHKDFVIEEESQWLLQGWKGWNIYALSFWR 671
                                                    ****889*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.594306651IPR005202Transcription factor GRAS
PfamPF035142.9E-71332569IPR005202Transcription factor GRAS
PfamPF035141.3E-21575671IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MVMDHQSLSK SYGTTTGLEF SNEIETASKF ADQNSAGFAL SPPNAIPSNL TPALSVKPEV  60
NLQYINQILL EEDMEEKDHV HQGSTALEAA EKSFYELLGK KYPPYSDNGR PYVDQNHEIS  120
DEYHALNHSD SSCSTSSNNF VIHGWDYELV QFESSNNTPQ FTSDSIYSLL ESTCNVPEAH  180
FDSEFTLQFK RGFDEARKFL PKGDSQSNTF LVKEQEEETK NVVCMVEKED GNLYSLDGLR  240
AKKNPHSEDV NLEEGRSVKY TRQQSAAFIE STVIQQMFDM TLLHSKEVDS VPCETAQVEK  300
SKNVQPNAQS KGSINVKVNR RNTGGQRGVV DLRTLLTLCA EAVAADDQRT ATKLLKQIRQ  360
HASLVGDGMQ RMAHYFANGL QARIAGSGTQ IYKALMTRRT SAADVWKAHH LYYTAFPFYK  420
IINLFSSKTI MNLVENETRL HIVDFGILYG LRWPSLIQQL SARPGGAPKL RITGIDFALP  480
GFQPAQRVEE TGRRLAHYAE TFNVQFEFNA IAQRWDTIQI EDLKLDNNEV LVVNCMNKLN  540
YLLDETVVVE SPRQLVLNLI RKMNPYVFIQ GVVNAAYERM VIESESCGRK AMNVIACEGS  600
ERIERPETYK QWQLRHLRAG FKQLHLNQEM MNTAKDWLKS CYHKDFVIEE ESQWLLQGWK  660
GWNIYALSFW RPDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-3433967225379Protein SCARECROW
5b3h_D2e-3433967225379Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023889824.10.0scarecrow-like protein 14
TrEMBLA0A2N9ES760.0A0A2N9ES76_FAGSY; Uncharacterized protein
STRINGXP_006486464.10.0(Citrus sinensis)
STRINGXP_006435553.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-152GRAS family protein