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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
maker-scaffold01265-snap-gene-0.37-mRNA-1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family |
MYB_related |
Protein Properties |
Length: 178aa MW: 20140.6 Da PI: 6.9328 |
Description |
MYB_related family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
maker-scaffold01265-snap-gene-0.37-mRNA-1 | genome | THGP | View Nucleic Acid |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 56.8 | 5.2e-18 | 14 | 72 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT............-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg............tWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd+ l+ +++ +G g +W++Ia++++ gRt++++k++w+++l
maker-scaffold01265-snap-gene-0.37-mRNA-1 14 KGPWTPEEDQVLISYIQTYGHGnwralpkqagllRWSAIAARLP-GRTDNEIKNFWNSHL 72
79******************************************.************986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 178 aa
Download sequence Send
to blast |
MVRTPCCEKM GLKKGPWTPE EDQVLISYIQ TYGHGNWRAL PKQAGLLRWS AIAARLPGRT 60 DNEIKNFWNS HLKKRSLAQN LATSTTTNQA VGTPGYMLDR DFQGQVHAPN LPQESWKFSC 120 LDPIRMEAEG SSQTISMETE ETFNNDSSKN NDEMEFWYKL FIKSGESSQP HVNLGQSG
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}. |