PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

maker-scaffold01189-augustus-gene-0.32-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

HB-other

Protein Properties

Length: 1880aa MW: 211320 Da PI: 4.9813

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold01189-augustus-gene-0.32-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.1	3e-18	20	76	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + kR t++qle+Le+ ++ + yps++ r+eL++klgL++rq ++WF+ rR k++k maker-scaffold01189-augustus-gene-0.32-mRNA-1 20 KTKRKMKTASQLEILEKTYAVEAYPSEALRAELSAKLGLSDRQLQMWFCHRRLKDRK 76 6799***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.2E-17	8	76	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.61E-15	16	76	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.325	17	77	IPR001356	Homeobox domain
SMART	SM00389	2.5E-16	19	81	IPR001356	Homeobox domain
Pfam	PF00046	6.5E-16	20	76	IPR001356	Homeobox domain
CDD	cd00086	6.16E-14	20	76	No hit	No description
SMART	SM00571	9.7E-22	599	658	IPR018501	DDT domain
PROSITE profile	PS50827	16.873	599	658	IPR018501	DDT domain
Pfam	PF02791	1.2E-16	600	655	IPR018501	DDT domain
Pfam	PF05066	9.4E-16	800	868	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	8.7E-8	1017	1059	IPR028942	WHIM1 domain
Pfam	PF15613	1.7E-13	1201	1273	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1880 aa Download sequence Send to blast
MEVAIGSDGE KKKPPEVENK TKRKMKTASQ LEILEKTYAV EAYPSEALRA ELSAKLGLSD 60 RQLQMWFCHR RLKDRKGPSS GKRQLKDSPA REEMVVAEVG NELGSGSGSA SSLLADSRRV 120 VGRPGVGVAV ARMGGDVAVM SRYYEPQQTI AELRAIAFVE AQLGEPLRED GPILGMEFDS 180 LPPDAFGAPI GAVTVGQQKQ SGRPFEPKLY ERPDAKPIKR ENLAEKARKE GEREGTVVLL 240 REFLRGNWLR ESNPSVEERQ REEEEQRMRG KGAGRALHEY QFLPEQPTVR TDAYERVAPS 300 YHYGSPTDGP NARTSSVISG RSFMHGNEQV PSGYSFQGQV PGLNLLPNQG RQGHLLPSVS 360 GEYDTVPRKN AFPNIAMDAH FAAHPITQLE NPFLPSDRRV THDEDVPRME RKRKSEEARI 420 AREVEAHEKR IRKELEKQDI LRRKREEQIR KEMERHDRER RKEEERLLRE KQREEERYQR 480 EQRRELERRE KFLQKESLRA EKLRQKEELR REKEAARLKA ANERAIARRI AKESMELIED 540 ERLELMELAT SSKGLPSIVS LDYDTLQNLE LYRDMLAVFP PKSVCLKRPF TIQPWTDSEE 600 NVGNLLMVWR FLITFADVLG LWPFTLDEFI QAFHDYDPRL LGEINIALLR SIIKDIEDVA 660 RTPATGLGTN QYSAANPGGG HPQIVEGVSD WAVVSTFAPR FGILYQAYAW GFDIRNWQGH 720 LNPLTWPEIL REFALSAGFG PQLKRKNIEQ TYLRDDNEGN DGEDVISNLR NGAAVESAVA 780 IMQERGFSNP RRSRHRLTPG TVKFAAFHVL SLEGSKGLNI LEVAEKIQKS GLRDLTTSKT 840 PEASIAAALS RDSKLFERTA PSTYCVRSAY RKDPADAEAI LSMARERIRI FKSGIVDGED 900 ADDAERDGDS ESDGGEDPEV DDLGTETNSN KEDQNSKETT EFSATPLGNG KGSDDVLETP 960 QVSLGNIDEG LFSMQSGGNG DKDSGLFVAQ SVDASGIGNN MVVGNQEDAD IDESNPGESW 1020 VQGLMEGEYS DLSVEERLSA LVALIGIAIE GNSIHVVLEE RLEAANALKK QMWAEAQLDK 1080 RRMKEEFVLR TTYSSFAGNK AEPNLLTISL AEDRQSPLCT INDKNNETSV APAIEQEQLN 1140 NIQNDQNYLN SLPSEENLQI HDYPTGPDNL PYQQPGYVAE RSRSQLKSYI GHKAEEMYVY 1200 RSLPLGQDRR RNRYWRFITS ASRNDPGCGR IFVELHDGQW RLIDSEEGFD ALLSSLDVRG 1260 VRESHLHTML QKIEMSFKES VRMNMRSAMG RHSGETVKTE AIEMVPGLDF SVGTDSPRST 1320 VCADSDMSET STSFTIELGN NEREKNDALK RYQDFEKWMW KDCVNSAVIF AMKYGKKRDL 1380 QLLSTCDYCH DVYSFEDNHC PSCHKTYSSS RNSNFSEHVS QCEEKPKFDA QNAWHGSLSA 1440 PLRIRLLKVQ LSLIEVSIPL EALQPLWTNS YRKSWGMKLH SSSSAEDLLQ ALTLLESAIK 1500 RDYLSSNFES TTELLGSSNP LGCGTDYSFG PETVLVLPWI PHTTAAVALR LMEFDASISY 1560 MLKQKVDSQK DKGPWVIKLP SKYATVKNSK DDDTGHTPYQ VEHLKEEKWV DSGSGLASSG 1620 RGRGCRGRGR GRIRGGSSQG RVISSRAESG KRTSSTKSDR LGQALGWRGR PRGRGGRRRG 1680 RRSIRSRQRP AKVVVVGGDR DNSKDIILDK SPIGLEWNGD ESMQLPGEDA GSTSSSERSD 1740 YDYENGQATG DEYDDMVMDD FAVGYPGRSD DLLQGTYYNV DVEEEEEEEE EEDEDDVDDN 1800 EGDAEDEQGD LDIDEYINGD SDEEGNGGGD TEQNLDQDQG LFKIRPAPMQ PVDTELIRPL 1860 QSSTVGVWRG GRRKFRHIDD

Sequence ? help Back to Top

Protein Sequence Length: 1880 aa Download sequence Send to blast

MEVAIGSDGE KKKPPEVENK TKRKMKTASQ LEILEKTYAV EAYPSEALRA ELSAKLGLSD  60
RQLQMWFCHR RLKDRKGPSS GKRQLKDSPA REEMVVAEVG NELGSGSGSA SSLLADSRRV  120
VGRPGVGVAV ARMGGDVAVM SRYYEPQQTI AELRAIAFVE AQLGEPLRED GPILGMEFDS  180
LPPDAFGAPI GAVTVGQQKQ SGRPFEPKLY ERPDAKPIKR ENLAEKARKE GEREGTVVLL  240
REFLRGNWLR ESNPSVEERQ REEEEQRMRG KGAGRALHEY QFLPEQPTVR TDAYERVAPS  300
YHYGSPTDGP NARTSSVISG RSFMHGNEQV PSGYSFQGQV PGLNLLPNQG RQGHLLPSVS  360
GEYDTVPRKN AFPNIAMDAH FAAHPITQLE NPFLPSDRRV THDEDVPRME RKRKSEEARI  420
AREVEAHEKR IRKELEKQDI LRRKREEQIR KEMERHDRER RKEEERLLRE KQREEERYQR  480
EQRRELERRE KFLQKESLRA EKLRQKEELR REKEAARLKA ANERAIARRI AKESMELIED  540
ERLELMELAT SSKGLPSIVS LDYDTLQNLE LYRDMLAVFP PKSVCLKRPF TIQPWTDSEE  600
NVGNLLMVWR FLITFADVLG LWPFTLDEFI QAFHDYDPRL LGEINIALLR SIIKDIEDVA  660
RTPATGLGTN QYSAANPGGG HPQIVEGVSD WAVVSTFAPR FGILYQAYAW GFDIRNWQGH  720
LNPLTWPEIL REFALSAGFG PQLKRKNIEQ TYLRDDNEGN DGEDVISNLR NGAAVESAVA  780
IMQERGFSNP RRSRHRLTPG TVKFAAFHVL SLEGSKGLNI LEVAEKIQKS GLRDLTTSKT  840
PEASIAAALS RDSKLFERTA PSTYCVRSAY RKDPADAEAI LSMARERIRI FKSGIVDGED  900
ADDAERDGDS ESDGGEDPEV DDLGTETNSN KEDQNSKETT EFSATPLGNG KGSDDVLETP  960
QVSLGNIDEG LFSMQSGGNG DKDSGLFVAQ SVDASGIGNN MVVGNQEDAD IDESNPGESW  1020
VQGLMEGEYS DLSVEERLSA LVALIGIAIE GNSIHVVLEE RLEAANALKK QMWAEAQLDK  1080
RRMKEEFVLR TTYSSFAGNK AEPNLLTISL AEDRQSPLCT INDKNNETSV APAIEQEQLN  1140
NIQNDQNYLN SLPSEENLQI HDYPTGPDNL PYQQPGYVAE RSRSQLKSYI GHKAEEMYVY  1200
RSLPLGQDRR RNRYWRFITS ASRNDPGCGR IFVELHDGQW RLIDSEEGFD ALLSSLDVRG  1260
VRESHLHTML QKIEMSFKES VRMNMRSAMG RHSGETVKTE AIEMVPGLDF SVGTDSPRST  1320
VCADSDMSET STSFTIELGN NEREKNDALK RYQDFEKWMW KDCVNSAVIF AMKYGKKRDL  1380
QLLSTCDYCH DVYSFEDNHC PSCHKTYSSS RNSNFSEHVS QCEEKPKFDA QNAWHGSLSA  1440
PLRIRLLKVQ LSLIEVSIPL EALQPLWTNS YRKSWGMKLH SSSSAEDLLQ ALTLLESAIK  1500
RDYLSSNFES TTELLGSSNP LGCGTDYSFG PETVLVLPWI PHTTAAVALR LMEFDASISY  1560
MLKQKVDSQK DKGPWVIKLP SKYATVKNSK DDDTGHTPYQ VEHLKEEKWV DSGSGLASSG  1620
RGRGCRGRGR GRIRGGSSQG RVISSRAESG KRTSSTKSDR LGQALGWRGR PRGRGGRRRG  1680
RRSIRSRQRP AKVVVVGGDR DNSKDIILDK SPIGLEWNGD ESMQLPGEDA GSTSSSERSD  1740
YDYENGQATG DEYDDMVMDD FAVGYPGRSD DLLQGTYYNV DVEEEEEEEE EEDEDDVDDN  1800
EGDAEDEQGD LDIDEYINGD SDEEGNGGGD TEQNLDQDQG LFKIRPAPMQ PVDTELIRPL  1860
QSSTVGVWRG GRRKFRHIDD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023901361.1	0.0	homeobox-DDT domain protein RLT2
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A2I4F9F2	0.0	A0A2I4F9F2_JUGRE; homeobox-DDT domain protein RLT2-like isoform X1
STRING	POPTR_0017s04760.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2523	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator