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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | maker-scaffold01170-augustus-gene-0.32-mRNA-1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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| Family | MYB | ||||||||
| Protein Properties | Length: 1118aa MW: 125444 Da PI: 8.404 | ||||||||
| Description | MYB family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 24.3 | 7.3e-08 | 380 | 424 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
++WT Ed+ l+ +v++ G +W Ia +g++Rt+ qc r+q
maker-scaffold01170-augustus-gene-0.32-mRNA-1 380 NPWTIMEDKNLLLLVQEKGIINWFDIAVSLGTNRTPFQCLARYQR 424
69*****************************************96 PP
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| 2 | Myb_DNA-binding | 39.1 | 1.7e-12 | 432 | 476 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
+g+WT++Ed +l av+ +G +W ++a+t+ gR + qc +rw k
maker-scaffold01170-augustus-gene-0.32-mRNA-1 432 KGAWTKDEDAQLCAAVEVFGESDWQSVASTLE-GRAGTQCSNRWKK 476
79******************************.***********98 PP
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| 3 | Myb_DNA-binding | 48.5 | 1.9e-15 | 486 | 529 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
grW ++Ed++l+ av ++G+++W++Ia+ ++ gRt qc++rw +
maker-scaffold01170-augustus-gene-0.32-mRNA-1 486 GRWIEDEDKRLKVAVMLFGPKNWNKIAQFVP-GRTQVQCRERWVN 529
89*****************************.***********87 PP
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| 4 | Myb_DNA-binding | 49.4 | 1.1e-15 | 539 | 582 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
WT+eEd +l+ a++++G W+++a++++ Rt++qc+ rw +l
maker-scaffold01170-augustus-gene-0.32-mRNA-1 539 EWTEEEDSKLKAAIAEHGYC-WAKVAACVP-PRTDNQCRRRWKVLL 582
6*****************99.*********.9**********9875 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50090 | 5.668 | 274 | 373 | IPR017877 | Myb-like domain |
| SMART | SM00717 | 0.15 | 278 | 375 | IPR001005 | SANT/Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 1.7E-8 | 281 | 297 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 1.7E-8 | 346 | 386 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 2.54E-14 | 356 | 423 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS50090 | 8.502 | 374 | 426 | IPR017877 | Myb-like domain |
| SMART | SM00717 | 2.7E-7 | 378 | 428 | IPR001005 | SANT/Myb domain |
| Pfam | PF00249 | 2.5E-6 | 380 | 424 | IPR001005 | SANT/Myb domain |
| CDD | cd00167 | 4.30E-6 | 381 | 426 | No hit | No description |
| Gene3D | G3DSA:1.10.10.60 | 5.6E-13 | 387 | 434 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 2.01E-17 | 411 | 480 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS51294 | 19.677 | 427 | 482 | IPR017930 | Myb domain |
| SMART | SM00717 | 5.1E-10 | 431 | 480 | IPR001005 | SANT/Myb domain |
| Pfam | PF00249 | 2.4E-10 | 432 | 476 | IPR001005 | SANT/Myb domain |
| CDD | cd00167 | 3.80E-8 | 434 | 478 | No hit | No description |
| Gene3D | G3DSA:1.10.10.60 | 2.3E-15 | 435 | 480 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 5.14E-26 | 482 | 578 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 1.2E-18 | 482 | 534 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS51294 | 12.132 | 483 | 531 | IPR017930 | Myb domain |
| SMART | SM00717 | 2.8E-13 | 484 | 533 | IPR001005 | SANT/Myb domain |
| Pfam | PF00249 | 2.0E-14 | 486 | 529 | IPR001005 | SANT/Myb domain |
| CDD | cd00167 | 8.16E-12 | 487 | 531 | No hit | No description |
| PROSITE profile | PS51294 | 22.966 | 532 | 586 | IPR017930 | Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 1.4E-17 | 535 | 582 | IPR009057 | Homeodomain-like |
| SMART | SM00717 | 4.8E-13 | 536 | 584 | IPR001005 | SANT/Myb domain |
| Pfam | PF00249 | 3.1E-14 | 539 | 582 | IPR001005 | SANT/Myb domain |
| CDD | cd00167 | 1.17E-13 | 539 | 582 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 1118 aa Download sequence Send to blast |
MSPRTDQEKA ELTDDDDDDV LDDDIEALRR ACMITGENPN DLINNNNNPS PSLFAAGAGG 60 DDSDDDLELV RNIQNRFSNS NSDTLSLKPL CALPPMMASD DDDEDDFETL RAIQQRFAAY 120 DSVVVAEFGR VIIIENPSSF VENHQPGASK SPMLPLKKSS FPKSALLLMD AIKKNRSSQK 180 FIRSQLVNLE ARIEENKRLK ERVKILKDFQ ASCKKRTGRA LSQRKDPRVQ LISVKKSLVS 240 KDSKVNDKRV HAMYYGPAEN SHVTNYRMAL TNFPLSLDRK KWSKAERENL GKGIRQQFQE 300 MVLQISVDQF SDLDGSCGDS NDFDKILVSI KDLEVTPENL REFLPKVNWE QLASMYVVGR 360 SGAECEVRWL NYEDPLINHN PWTIMEDKNL LLLVQEKGII NWFDIAVSLG TNRTPFQCLA 420 RYQRSLNASI LKGAWTKDED AQLCAAVEVF GESDWQSVAS TLEGRAGTQC SNRWKKSLHP 480 TRVRVGRWIE DEDKRLKVAV MLFGPKNWNK IAQFVPGRTQ VQCRERWVNS LDPSLSWSEW 540 TEEEDSKLKA AIAEHGYCWA KVAACVPPRT DNQCRRRWKV LLPHEVPMLK EARRIQKAAL 600 ISNFVDREVE RPALGPSDFL PLPMIGSISE PENENSCSKQ KGRLRGKATS KEKKNAASCN 660 VPRKIRFKKC EQQSQVCSGA IEKKKHPKPC SKRKKCIKPV AENQSLVLLP ESLESGTTNG 720 ECVEAAIDNN STSNKKTSKH YSRRIKCTTD LGGNQNAMLS SAKPMLSGIT NDEHPLDHVS 780 CLDSTLLPIT NGEVVDSMNE HMQTGKKRPT KLRSKRKKCM ELAEDSHSFL SHPESGEFGK 840 SDGEGVENSI LDMEKGAVKQ QKRRKIRNEP SGKCQDVSVL LQQDTLEVSK HRNVSSKQIL 900 GATNGDDITL ACFLHNKPKK RRLGVAKNTS QACSSSSPKK GVESLSNVAE KLKHGNQNLS 960 TTQDKESQAF CLGGNPDDLL PCKLQSSHLV DMQTIIDSDN GPDRKDFVQG QHAAHDPVSF 1020 SPEGDCEEDG DITLSCLLRN KLKKKKGSKS ISRVNRHNDG NRSNMQAGYS QTTDCCSTYL 1080 FGESLNINLE RPYESGLLFM RISKPPWLRL MMSLACFL |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1h88_C | 1e-30 | 348 | 578 | 6 | 155 | MYB PROTO-ONCOGENE PROTEIN |
| 1h89_C | 1e-30 | 348 | 578 | 6 | 155 | MYB PROTO-ONCOGENE PROTEIN |
| Search in ModeBase | ||||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_023919207.1 | 0.0 | uncharacterized protein LOC112030773 isoform X1 | ||||
| TrEMBL | A0A2N9GBE5 | 0.0 | A0A2N9GBE5_FAGSY; Uncharacterized protein | ||||
| STRING | XP_010097590.1 | 0.0 | (Morus notabilis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF7441 | 33 | 44 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G18100.1 | 0.0 | myb domain protein 4r1 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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