PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold01152-snap-gene-0.16-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | C2H2 | ||||||||
Protein Properties | Length: 605aa MW: 66097.5 Da PI: 9.2477 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.1 | 3.1e-05 | 95 | 117 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H maker-scaffold01152-snap-gene-0.16-mRNA-1 95 FICEVCNKGFQREQNLQLHRRGH 117 89*******************88 PP | |||||||
2 | zf-C2H2 | 13.1 | 0.00029 | 171 | 193 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ maker-scaffold01152-snap-gene-0.16-mRNA-1 171 WKCEKCSKRYAVQSDWKAHSKTC 193 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.09E-7 | 94 | 117 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 6.8E-6 | 94 | 117 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12171 | 3.0E-5 | 95 | 117 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.99 | 95 | 117 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0052 | 95 | 117 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 97 | 117 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 130 | 136 | 166 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.2E-5 | 159 | 192 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.09E-7 | 166 | 191 | No hit | No description |
SMART | SM00355 | 130 | 171 | 191 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 605 aa Download sequence Send to blast |
TTRATTSLKI EILEDGLVFL IHTVFWNQRR ESKPDNTTTF FYNHFLNYSN HSSSKEKEKP 60 TWKSKQFIVC HFSTTDPDAE VIALSPKTLM ATNRFICEVC NKGFQREQNL QLHRRGHNLP 120 WKLKQKTNKE PKRKVYLCPE PTCVHHDPSR ALGDLTGIKK HYSRKHGEKK WKCEKCSKRY 180 AVQSDWKAHS KTCGTREYRC DCGTLFSRRD SFITHRAFCD ALAQESARHP TNLNTMGSHL 240 FGSNHMSLGL SQLGSQIPPL QNQNPPSSNM LRLGSAGGAK FEHLISPSNP SSFGQPPQSM 300 HSSSLFIQDA NQGFPNKPQL HGLMQLPDLQ SNSNNSSPAA SLFNLSFFPN NNSSPGGISS 360 GDNVNMSSTN LSSSGLLMQD QLNNSNGGSQ GTTLFSTNMG DHVGSGVSSL YSNSLPPENI 420 TSHMSATALL QKAAQMGSTT SSNNSSSMLR GLASSKSEKQ NVLANFGVSF GNDNGGESLR 480 SHIESGNHLQ GLMNSLANAS SSMFGRGQDN NFGGFNGSGV TLDQHHSNTS FSTVDEAKLH 540 QNLAVNFGGS DKLTLDFLGV GGMVRNMGGG YSQREQQHAI NMSSLDPELK TAQQASQAFG 600 STTMQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-34 | 167 | 228 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 3e-34 | 167 | 228 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00256 | DAP | Transfer from AT2G02080 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023918792.1 | 0.0 | protein indeterminate-domain 5, chloroplastic-like | ||||
Refseq | XP_023918793.1 | 0.0 | protein indeterminate-domain 5, chloroplastic-like | ||||
TrEMBL | A0A2N9EG24 | 0.0 | A0A2N9EG24_FAGSY; Uncharacterized protein | ||||
STRING | EOY01198 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1536 | 33 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02070.1 | 1e-112 | indeterminate(ID)-domain 5 |