|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
maker-scaffold01152-snap-gene-0.15-mRNA-1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
Family |
C2H2 |
Protein Properties |
Length: 471aa MW: 51410.9 Da PI: 8.6902 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
maker-scaffold01152-snap-gene-0.15-mRNA-1 | genome | THGP | View Nucleic Acid |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 16.5 | 2.3e-05 | 21 | 43 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C+ C+k F r nL+ H r H
maker-scaffold01152-snap-gene-0.15-mRNA-1 21 FICEVCNKGFQREQNLQLHRRGH 43
89*******************88 PP
|
2 | zf-C2H2 | 13.5 | 0.00022 | 97 | 119 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC++C+k++ +s+ k H +t+
maker-scaffold01152-snap-gene-0.15-mRNA-1 97 WKCEKCSKRYAVQSDWKAHSKTC 119
58*****************9998 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 471 aa
Download sequence Send
to blast |
MDPDAEVIAL SPKTLMATNR FICEVCNKGF QREQNLQLHR RGHNLPWKLK QKTTKEPKRK 60 VYLCPEPTCV HHDPSRALGD LTGIKKHYSR KHGEKKWKCE KCSKRYAVQS DWKAHSKTCG 120 TREYRCDCGT LFSRRDSFIT HRAFCDALAQ ESARQPPNMG STIGSHIYGN SNMGLGLSQV 180 GPQISSMQDQ NNQSNDMLRL GSSRPGQFDH LLPPGIGSSF RPPHPMPSSA LFMQDSSQNY 240 HQEHQSQQGL MSEKSFHGLM PFSDLQNSTT SNPPPAGTNL FNLGFMSNTS SNSSSNANNN 300 TSLPSSAMLM PNHFNNENGS GGGSEGSNLF SNNMMADQIT SGVPSLYTTS VQSNTAMPHM 360 SATALLQKAA QMGSTSSNNN TSSSLLRSFG SSSSKSERQV VQGGLSSMFG ENSENHFQDL 420 MNSFTSGNSS IFGSKFGTYD TNRTNLELMD QEPNNKPNQN LSGGGGGSGS D
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AC160454 | 1e-144 | AC160454.31 Glycine max cultivar Williams 82 clone gmw1-15k6, complete sequence. |