PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold01093-augustus-gene-0.27-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | MYB | ||||||||
Protein Properties | Length: 253aa MW: 29046.6 Da PI: 6.5166 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.1 | 2.6e-15 | 10 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed +l + v ++G ++W+ Ia+ g++Rt+k+c++rw +yl maker-scaffold01093-augustus-gene-0.27-mRNA-1 10 KGPWTEQEDFKLNCFVGLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 57 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.6 | 2.4e-17 | 63 | 108 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++ maker-scaffold01093-augustus-gene-0.27-mRNA-1 63 RGKMTPQEERLVLELHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 108 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.959 | 5 | 57 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.12E-29 | 7 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-13 | 9 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-14 | 10 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-19 | 11 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.72E-9 | 12 | 57 | No hit | No description |
PROSITE profile | PS51294 | 27.334 | 58 | 112 | IPR017930 | Myb domain |
SMART | SM00717 | 7.6E-17 | 62 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.9E-16 | 63 | 107 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.4E-24 | 65 | 111 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.76E-12 | 65 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MKMVQEGIRK GPWTEQEDFK LNCFVGLFGD RRWDFIAKVS GLNRTGKSCR LRWVNYLHPG 60 LKRGKMTPQE ERLVLELHSK WGNRWSRIAR KLPGRTDNEI KNYWRTHMRK KAQEKKRAMS 120 PSSSSSNCCS SSSPSNPIVE SLPLTETREK SFYDTGGPDI KASAEKQVEE EQGGENGYSM 180 DDIWKDIENT LIPGNDGYTE EGSSFPCPTL DFPTWDQYHS ESPWTMAEES KMFLPTCDQF 240 FPCSDIDTAY LTG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 4e-27 | 10 | 112 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023890064.1 | 1e-163 | transcription factor MYB59 isoform X1 | ||||
Swissprot | Q9LX82 | 2e-87 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A438G1I0 | 1e-115 | A0A438G1I0_VITVI; Transcription factor MYB59 | ||||
STRING | VIT_06s0004g04140.t01 | 1e-115 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4378 | 33 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.1 | 6e-87 | myb domain protein 48 |
Publications ? help Back to Top | |||
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