PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

maker-scaffold01044-snap-gene-0.26-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

FAR1

Protein Properties

Length: 236aa MW: 28043.8 Da PI: 9.554

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold01044-snap-gene-0.26-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	33.5	1.4e-10	58	131	22	90
FAR1 22 skrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.....dgkwevtklele 84 +++ngei +++f ++eg++ + + +ke+r+r++ ++gCka+l++ ++k ++w+vt ++ + maker-scaffold01044-snap-gene-0.26-mRNA-1 58 REKNGEIGRHNFFYYREGRQPLKMVDPSKEQRNRKSLKCGCKAHLTIVLRKsidifPKEWHVTIFVVD 125 368999****************999****************99887766679****** PP FAR1 85 HnHela 90 Hn el maker-scaffold01044-snap-gene-0.26-mRNA-1 126 HNYELL 131 9996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-8	58	131	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MENECPIDET GVIEEYEDIN LIENEFEPFV VFLVKKKFSF SIKIMRIKMV LQFEKVVREK 60 NGEIGRHNFF YYREGRQPLK MVDPSKEQRN RKSLKCGCKA HLTIVLRKSI DIFPKEWHVT 120 IFVVDHNYEL LSLSSVRFLS ANQVNTKDDK NCILLYKKAG LSIGEIIHVM ELKKNVKYGH 180 LPFFQRDIRN LYVKMRKMYV VNDVMDLSQF CKVAKEKNSK FQYAFTTDDE KRILHV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014622071.1	8e-59	protein FAR1-RELATED SEQUENCE 11-like isoform X4
TrEMBL	A0A072UI16	2e-58	A0A072UI16_MEDTR; FAR1 DNA-binding domain protein
STRING	AES62383	7e-56	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15165	4	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	7e-34	FAR1-related sequence 11