PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01008-snap-gene-0.50-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family HD-ZIP
Protein Properties Length: 259aa    MW: 29874.7 Da    PI: 6.6713
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01008-snap-gene-0.50-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox603.9e-1973124556
                                                SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                                   Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                                ++f++eq++ Le++F++++ p  +++++LA++lgL  rqV +WFqNrRa+ k
  maker-scaffold01008-snap-gene-0.50-mRNA-1  73 QRFNDEQIKLLETMFKEESRPESRKKQKLANELGLHPRQVATWFQNRRARLK 124
                                                68************************************************98 PP

2HD-ZIP_I/II100.81.2e-3273162493
                                HD-ZIP_I/II   4 rrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkrayd 71 
                                                +r+++eq+klLE++F+ee++ e+++K++la+eLgl+prqva WFqnrRAR ktkq+E++y+ Lk++y 
  maker-scaffold01008-snap-gene-0.50-mRNA-1  73 QRFNDEQIKLLETMFKEESRPESRKKQKLANELGLHPRQVATWFQNRRARLKTKQIEREYSLLKASYG 140
                                                79****************************************************************** PP

                                HD-ZIP_I/II  72 alkeenerLekeveeLreelke 93 
                                                +l+++ e+L+++++ L  +l++
  maker-scaffold01008-snap-gene-0.50-mRNA-1 141 TLASNFESLKRDNQLLLLQLQK 162
                                                **************99988876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.79E-1860128IPR009057Homeodomain-like
PROSITE profilePS5007118.05866126IPR001356Homeobox domain
SMARTSM003891.9E-1668130IPR001356Homeobox domain
CDDcd000862.91E-1573127No hitNo description
Gene3DG3DSA:1.10.10.601.1E-1773133IPR009057Homeodomain-like
PfamPF000462.1E-1673124IPR001356Homeobox domain
PRINTSPR000314.4E-597106IPR000047Helix-turn-helix motif
PROSITE patternPS000270101124IPR017970Homeobox, conserved site
PRINTSPR000314.4E-5106122IPR000047Helix-turn-helix motif
PfamPF021832.4E-14126167IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MEEERDIPTP YMTGVRMEQL VGCFFLRIHT PSKSQIYYYM FITSKCWLKK RCALIAIESS  60
HTMASKKKNK DMQRFNDEQI KLLETMFKEE SRPESRKKQK LANELGLHPR QVATWFQNRR  120
ARLKTKQIER EYSLLKASYG TLASNFESLK RDNQLLLLQL QKLKNMLDKQ HGKNGMSSDS  180
NSVKGDSTSE SKEKPSVLSE SVNHNINMFI GDANCEDAEC TDEETGTLNI AEPIDDSLTS  240
SEDEDWCSFL DQSSGNSQW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118126RRARLKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023874761.11e-123homeobox-leucine zipper protein ATHB-12-like
TrEMBLA0A2N9FZI81e-90A0A2N9FZI8_FAGSY; Uncharacterized protein
STRINGEOY238892e-54(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16057910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.24e-33homeobox 7