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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
maker-scaffold01008-snap-gene-0.50-mRNA-1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family |
HD-ZIP |
Protein Properties |
Length: 259aa MW: 29874.7 Da PI: 6.6713 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
maker-scaffold01008-snap-gene-0.50-mRNA-1 | genome | THGP | View Nucleic Acid |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 60 | 3.9e-19 | 73 | 124 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
++f++eq++ Le++F++++ p +++++LA++lgL rqV +WFqNrRa+ k
maker-scaffold01008-snap-gene-0.50-mRNA-1 73 QRFNDEQIKLLETMFKEESRPESRKKQKLANELGLHPRQVATWFQNRRARLK 124
68************************************************98 PP
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2 | HD-ZIP_I/II | 100.8 | 1.2e-32 | 73 | 162 | 4 | 93 |
HD-ZIP_I/II 4 rrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkrayd 71
+r+++eq+klLE++F+ee++ e+++K++la+eLgl+prqva WFqnrRAR ktkq+E++y+ Lk++y
maker-scaffold01008-snap-gene-0.50-mRNA-1 73 QRFNDEQIKLLETMFKEESRPESRKKQKLANELGLHPRQVATWFQNRRARLKTKQIEREYSLLKASYG 140
79****************************************************************** PP
HD-ZIP_I/II 72 alkeenerLekeveeLreelke 93
+l+++ e+L+++++ L +l++
maker-scaffold01008-snap-gene-0.50-mRNA-1 141 TLASNFESLKRDNQLLLLQLQK 162
**************99988876 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 259 aa
Download sequence Send
to blast |
MEEERDIPTP YMTGVRMEQL VGCFFLRIHT PSKSQIYYYM FITSKCWLKK RCALIAIESS 60 HTMASKKKNK DMQRFNDEQI KLLETMFKEE SRPESRKKQK LANELGLHPR QVATWFQNRR 120 ARLKTKQIER EYSLLKASYG TLASNFESLK RDNQLLLLQL QKLKNMLDKQ HGKNGMSSDS 180 NSVKGDSTSE SKEKPSVLSE SVNHNINMFI GDANCEDAEC TDEETGTLNI AEPIDDSLTS 240 SEDEDWCSFL DQSSGNSQW
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Nucleic Localization
Signal ? help
Back to Top |
 |
No. |
Start |
End |
Sequence |
1 | 118 | 126 | RRARLKTKQ |