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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold00988-augustus-gene-0.35-mRNA-2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | G2-like | ||||||||
Protein Properties | Length: 313aa MW: 33958 Da PI: 6.7982 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.9 | 5.3e-34 | 48 | 102 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl maker-scaffold00988-augustus-gene-0.35-mRNA-2 48 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 102 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.844 | 45 | 105 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.42E-18 | 47 | 102 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.5E-32 | 47 | 103 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-25 | 48 | 103 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-9 | 50 | 101 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.6E-10 | 134 | 170 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MYQQKSVHSS SLVGNNSLVH GQHLDCVAST MDPINGGNNL NNASLASKQR LRWTHELHER 60 FVDAVAQLGG PDRATPKGVL RVMGVQGLTI YHVKSHLQKY RLAKFLPDPS ADGKKADKKE 120 TGDMITNLDG SSGMQITEAL KLQMEVQRQL QLRIEAQGKY LKKIIEEQQR LSGVLSETTD 180 SGVPGPASGD NCLDSDNKTD PATPAPTSEA PLLDKAAKEG APASLSIDES FSSHHEPLTP 240 DSGCHAGSPT ESPRGERSMK KQRVSMGGVY AKSEMVLPHQ ILESSLSSSY QQPHSVFLSR 300 EQFEPPSGNI NQE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-23 | 48 | 105 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-23 | 48 | 105 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-23 | 48 | 105 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-23 | 48 | 105 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00252 | DAP | Transfer from AT2G01060 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023903823.1 | 0.0 | uncharacterized protein LOC112015623 | ||||
Swissprot | Q9SJW0 | 1e-117 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A2N9INB1 | 0.0 | A0A2N9INB1_FAGSY; Uncharacterized protein | ||||
STRING | VIT_00s0475g00040.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 1e-114 | G2-like family protein |