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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
maker-scaffold00963-snap-gene-0.46-mRNA-1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family |
B3 |
Protein Properties |
Length: 218aa MW: 24083.8 Da PI: 9.2759 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
maker-scaffold00963-snap-gene-0.46-mRNA-1 | genome | THGP | View Nucleic Acid |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 46.2 | 7.9e-15 | 133 | 215 | 17 | 98 |
E--HHH.HTT...---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT- CS
B3 17 vlpkkfaeeh...ggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegD 78
+lp+k +++ g++ +++l++ r W vkl + +s++++ ++GW+ Fv +n L++gD
maker-scaffold00963-snap-gene-0.46-mRNA-1 133 YLPRKGCTKDytkGSI--LTVKLQV---VDRLWPVKLYVyegMYRSSSCIVSGGWSAFVTENTLRVGD 195
6777777555432222..3333333...459******44687666777999***************** PP
EEEEEE-SSSEE..EEEEE- CS
B3 79 fvvFkldgrsefelvvkvfr 98
++vF+l+ r++ l+v++fr
maker-scaffold00963-snap-gene-0.46-mRNA-1 196 VCVFELIMRDDVVLKVHIFR 215
*******9999999***997 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 218 aa
Download sequence Send
to blast |
MNARVSFIRR ECKGLSLGVG GNRVGCKSSP LVKLESDCNL DDVSSSHDQC PKKDGGVGIS 60 TNGRRLKGKA LVKNQEYKAL ESKQELMTTN GKAENLVRAN AFKSENALFT VIIHPSYLNG 120 KDCASLPHGS INYLPRKGCT KDYTKGSILT VKLQVVDRLW PVKLYVYEGM YRSSSCIVSG 180 GWSAFVTENT LRVGDVCVFE LIMRDDVVLK VHIFRCLD
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4i1k_A | 8e-19 | 77 | 215 | 17 | 141 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 8e-19 | 77 | 215 | 17 | 141 | B3 domain-containing transcription factor VRN1 |