PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00910-snap-gene-0.45-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family G2-like
Protein Properties Length: 176aa    MW: 19590.3 Da    PI: 10.3825
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00910-snap-gene-0.45-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like73.82.4e-23107156151
                                    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                                                +p+++Wt+ LH+rF+ea++++ G ekA+Pk+ile+m+v gLt+e+v+SHLQ
  maker-scaffold00910-snap-gene-0.45-mRNA-1 107 RPKVVWTTSLHNRFLEAIKHI-GLEKAVPKRILEIMNVRGLTRENVASHLQ 156
                                                589******************.****************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.5E-7176No hitNo description
SuperFamilySSF521723.02E-5147IPR011006CheY-like superfamily
PROSITE profilePS5011014.213139IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF466899.68E-15105157IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-22105156IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-22108156IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MSADDGENAM LKSLEGGAAF YMVKPVSPED LKNLWQYAVA AKRGKSDVIE DVKNIPAKSS  60
VVSCENKQSA ASSVNQEKQD KKDSKRKGAP KKGKEDGNQK SRGARKRPKV VWTTSLHNRF  120
LEAIKHIGLE KAVPKRILEI MNVRGLTREN VASHLQWRKD GSKDVQLGVE MFETDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-20104156254ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023896800.12e-96putative two-component response regulator ARR21
TrEMBLA0A251QN382e-53A0A251QN38_PRUPE; Uncharacterized protein (Fragment)
STRINGEMJ219375e-53(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101422534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.21e-32response regulator 1