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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold00873-snap-gene-0.35-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | NAC | ||||||||
Protein Properties | Length: 441aa MW: 50544.9 Da PI: 5.2356 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 59.3 | 1.3e-18 | 9 | 84 | 54 | 128 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykg..rapkgekt 119 +e+ wyfF++rd+ky++g+r+nr++ +g Wk tg ++ + +e +g +++L +y+g + +k+++t maker-scaffold00873-snap-gene-0.35-mRNA-1 9 NEEAWYFFTPRDRKYPNGSRPNRSAGDGSWKPTGIPIRIGQ-FDEYTGWRRSLDYYEGshEGEKSKRT 75 5789***********************************99.8899**********8744667889** PP NAM 120 dWvmheyrl 128 +W m ey+l maker-scaffold00873-snap-gene-0.35-mRNA-1 76 KWKMIEYTL 84 *******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 23.593 | 1 | 99 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 9.29E-22 | 7 | 94 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.8E-8 | 11 | 84 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 441 aa Download sequence Send to blast |
MVKNYKLINE EAWYFFTPRD RKYPNGSRPN RSAGDGSWKP TGIPIRIGQF DEYTGWRRSL 60 DYYEGSHEGE KSKRTKWKMI EYTLDKWVLC KVYEKVTSKK DEDDNNTQNT QSDQRNPSTS 120 PSVSNHDSSP RIIPNSLDVH GNQLEATTST PLNHTHVYHM PPQIRHFNPS LGSTYNFYNQ 180 SYHNMINSTP RVVPNSLDVH GNHLEATTST TLNHTHAYHE PLLVSTCNFS NQSNYNMIDS 240 SPRVAPNSLD VHENHLGATT STTLNHAHVY YEPLQTQHFY SSWGSANNFP NQYPVNYNME 300 MTTLNHTAMS SSSEQPTHVR EDDPLLEAHG INTFGSKQEQ QDDLSKMTSM TTNSHELPTH 360 ARKYEPPLPE VHEDDTFGSK QKQQDYLSET GDIINDWVLS DSDFDISNLD STDWLLSDSD 420 FDMIDLDFSD ILDDDNHKPN S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-20 | 1 | 98 | 61 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-20 | 1 | 98 | 61 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-20 | 1 | 98 | 61 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-20 | 1 | 98 | 61 | 168 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-20 | 1 | 98 | 61 | 168 | NAC domain-containing protein 19 |
4dul_B | 1e-20 | 1 | 98 | 61 | 168 | NAC domain-containing protein 19 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15500.1 | 2e-23 | NAC domain containing protein 3 |