PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold00860-augustus-gene-0.36-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

NAC

Protein Properties

Length: 314aa MW: 35936.9 Da PI: 7.9777

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold00860-augustus-gene-0.36-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164.1	4.9e-51	16	146	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFsk 63 pGfrFhPtdeelv +yL++kve+k++++ e ik++diyk++PwdLpk + +++ewyfF++ maker-scaffold00860-augustus-gene-0.36-mRNA-1 16 LPGFRFHPTDEELVAFYLRRKVENKTISM-ELIKQIDIYKHDPWDLPKasGSNVKDTEWYFFCR 78 59*************************.99***********6334444888*** PP NAM 64 rdkkyatgkrknratksgyWkatgkdkevlskkgel...vglkktLvfykgrapkgektdWvmh 124 r +ky+++ r+nr+t sg+Wkatg dk+v+s +ge+ +glkktLv+y+g a kg+ktdW+mh maker-scaffold00860-augustus-gene-0.36-mRNA-1 79 RGRKYRNSIRPNRVTGSGFWKATGIDKPVYSMGGEDrdcIGLKKTLVYYRGAAGKGSKTDWMMH 142 ***************************94444555********************* PP NAM 125 eyrl 128 e+rl maker-scaffold00860-augustus-gene-0.36-mRNA-1 143 EFRL 146 98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.15E-54	13	183	IPR003441	NAC domain
PROSITE profile	PS51005	53.445	15	183	IPR003441	NAC domain
Pfam	PF02365	2.5E-26	17	146	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MSNQGTSQLE DEADQLPGFR FHPTDEELVA FYLRRKVENK TISMELIKQI DIYKHDPWDL 60 PKASGSNVKD TEWYFFCRRG RKYRNSIRPN RVTGSGFWKA TGIDKPVYSM GGEDRDCIGL 120 KKTLVYYRGA AGKGSKTDWM MHEFRLPAPS DTNTNTNTNT KLDNAKSTAQ EAEIWTLCRI 180 FKRNLSHRKY TPDWRELSTK RHQADTSSKA CRGESSNNRE SYINFGSPFI FQNENNNEIK 240 TVNHINNESN QLHVGQLSSS IAQPPSSSSI AQLPLSSSSS FPTNPVLDAN EFFTYENWDE 300 LRSVVEFAYD PSLL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-48	17	189	19	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-48	17	189	19	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-48	17	189	19	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-48	17	189	19	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-48	17	189	22	174	NAC domain-containing protein 19
3swm_B	1e-48	17	189	22	174	NAC domain-containing protein 19
3swm_C	1e-48	17	189	22	174	NAC domain-containing protein 19
3swm_D	1e-48	17	189	22	174	NAC domain-containing protein 19
3swp_A	1e-48	17	189	22	174	NAC domain-containing protein 19
3swp_B	1e-48	17	189	22	174	NAC domain-containing protein 19
3swp_C	1e-48	17	189	22	174	NAC domain-containing protein 19
3swp_D	1e-48	17	189	22	174	NAC domain-containing protein 19
4dul_A	1e-48	17	189	19	171	NAC domain-containing protein 19
4dul_B	1e-48	17	189	19	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00353	DAP	Transfer from AT3G12910	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023926837.1	0.0	transcription factor JUNGBRUNNEN 1-like
Swissprot	Q9SK55	2e-85	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A2N9FTZ1	1e-162	A0A2N9FTZ1_FAGSY; Uncharacterized protein
STRING	cassava4.1_024488m	1e-131	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1013	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12910.1	1e-90	NAC family protein

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]