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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold00830-augustus-gene-0.42-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | NAC | ||||||||
Protein Properties | Length: 292aa MW: 33928.5 Da PI: 6.4055 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164 | 5.4e-51 | 7 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskr 64 lppGfrFhPtdeelv++yL++k+++ +l + +i+e+d+yk++Pw+Lp+++ +ekewyfFs+r maker-scaffold00830-augustus-gene-0.42-mRNA-1 7 LPPGFRFHPTDEELVNHYLCRKCASLPLAV-PIIREIDLYKYDPWQLPEMALYGEKEWYFFSPR 69 79*************************999.88***************7666789********* PP NAM 65 dkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d+ky++g+r+nra+ +gyWkatg dk++ + + g+kk Lvfy g+ap+g kt+W+mheyrl maker-scaffold00830-augustus-gene-0.42-mRNA-1 70 DRKYPNGSRPNRAAGTGYWKATGADKPIGK--PKPLGIKKALVFYAGKAPRGIKTNWIMHEYRL 131 ****************************98..789***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.75E-62 | 4 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.089 | 7 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.6E-27 | 8 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MSSELELPPG FRFHPTDEEL VNHYLCRKCA SLPLAVPIIR EIDLYKYDPW QLPEMALYGE 60 KEWYFFSPRD RKYPNGSRPN RAAGTGYWKA TGADKPIGKP KPLGIKKALV FYAGKAPRGI 120 KTNWIMHEYR LANVDRSAGK KNNLRLDDWV LCRIYNKKGT LEKYQPLDQK KEKFAEMEEE 180 QKPKIMVSGQ NTTATQAMIS HDHLHMDTSD SVPVLHTDTS CSEQVVSPEV TWDKEVQSQP 240 KWNDNDIDNV FDYFQYNYMD GFTEDPFGPQ LQYPTDQLSP LQDMFMYLQK PL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-81 | 3 | 163 | 11 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023924037.1 | 0.0 | NAC domain-containing protein 2-like | ||||
Swissprot | Q39013 | 1e-130 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A2N9ECK1 | 0.0 | A0A2N9ECK1_FAGSY; Uncharacterized protein | ||||
STRING | XP_006464926.1 | 1e-158 | (Citrus sinensis) | ||||
STRING | POPTR_0005s07060.1 | 1e-158 | (Populus trichocarpa) | ||||
STRING | XP_006432090.1 | 1e-158 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1258 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-122 | NAC family protein |