PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold00818-snap-gene-0.59-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | C3H | ||||||||
Protein Properties | Length: 537aa MW: 60498.2 Da PI: 6.6695 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.6 | 7.9e-07 | 85 | 106 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C f++ G+C+ GdrC+F+Hg maker-scaffold00818-snap-gene-0.59-mRNA-1 85 APCYFYFN-GFCNKGDRCPFMHG 106 69******.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 11.188 | 6 | 35 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF15663 | 2.0E-11 | 6 | 61 | No hit | No description |
SMART | SM00356 | 0.0014 | 7 | 34 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 9.883 | 37 | 63 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1 | 39 | 62 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-6 | 81 | 106 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.225 | 81 | 108 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.8E-4 | 82 | 107 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-4 | 86 | 107 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 537 aa Download sequence Send to blast |
MDEELQKRNT DCVYFLASPL TCKKGADCEY RHSEIARLNP RDCWYWLSGD CVNPTCAFRH 60 PPLDGHAGVP SESAQCSAPV NKTNAPCYFY FNGFCNKGDR CPFMHGSDGN APAGKSTKAA 120 STSTDAPFVE KKISAGNETQ SAQTETHLNP YESVPKVAMN LNSEFKEGLD EPVPNNVSQQ 180 CASPQIAVCG YDEAPVIRSE SLLIADGFIQ SRSHFEADQS SEEQVEDDIE PEERWESSPG 240 FDVLVGDKSE NLGYDDDAEY LLDLDGEQRE LSSCFLGYDF EDPIKYDPSH PDLKQYERDF 300 YDGYDPDDKH LFNNVRRDPG HSRDSMLDSI LFRKRKHVPM ELTVGDHNGM DLRDHLRRHR 360 VIDGCPITGL SRRRGSSRLI GCSQERPHRH GMGQRLHGRM ASEVGMSTIE SVKKGTFSHG 420 ATANQRGLLR RSQQHRSKKV SRKKILSKHP FSSEVTRKPV TRERRSTQES TTFTGPKTLA 480 QIKEEKKKAE ENGVCIWKVG HSSRTTSTDF QAPKTLSEIL KDKRKLDFVR DSDNSGY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023927549.1 | 0.0 | zinc finger CCCH domain-containing protein 34-like | ||||
TrEMBL | A0A2N9I4B5 | 0.0 | A0A2N9I4B5_FAGSY; Uncharacterized protein | ||||
STRING | cassava4.1_005162m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13092 | 18 | 23 |