PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold00818-snap-gene-0.59-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

C3H

Protein Properties

Length: 537aa MW: 60498.2 Da PI: 6.6695

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold00818-snap-gene-0.59-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.6	7.9e-07	85	106	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C f++ G+C+ GdrC+F+Hg maker-scaffold00818-snap-gene-0.59-mRNA-1 85 APCYFYFN-GFCNKGDRCPFMHG 106 69****.***********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	11.188	6	35	IPR000571	Zinc finger, CCCH-type
Pfam	PF15663	2.0E-11	6	61	No hit	No description
SMART	SM00356	0.0014	7	34	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	9.883	37	63	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1	39	62	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.96E-6	81	106	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.225	81	108	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.8E-4	82	107	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.5E-4	86	107	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 537 aa Download sequence Send to blast
MDEELQKRNT DCVYFLASPL TCKKGADCEY RHSEIARLNP RDCWYWLSGD CVNPTCAFRH 60 PPLDGHAGVP SESAQCSAPV NKTNAPCYFY FNGFCNKGDR CPFMHGSDGN APAGKSTKAA 120 STSTDAPFVE KKISAGNETQ SAQTETHLNP YESVPKVAMN LNSEFKEGLD EPVPNNVSQQ 180 CASPQIAVCG YDEAPVIRSE SLLIADGFIQ SRSHFEADQS SEEQVEDDIE PEERWESSPG 240 FDVLVGDKSE NLGYDDDAEY LLDLDGEQRE LSSCFLGYDF EDPIKYDPSH PDLKQYERDF 300 YDGYDPDDKH LFNNVRRDPG HSRDSMLDSI LFRKRKHVPM ELTVGDHNGM DLRDHLRRHR 360 VIDGCPITGL SRRRGSSRLI GCSQERPHRH GMGQRLHGRM ASEVGMSTIE SVKKGTFSHG 420 ATANQRGLLR RSQQHRSKKV SRKKILSKHP FSSEVTRKPV TRERRSTQES TTFTGPKTLA 480 QIKEEKKKAE ENGVCIWKVG HSSRTTSTDF QAPKTLSEIL KDKRKLDFVR DSDNSGY

Sequence ? help Back to Top

Protein Sequence Length: 537 aa Download sequence Send to blast

MDEELQKRNT DCVYFLASPL TCKKGADCEY RHSEIARLNP RDCWYWLSGD CVNPTCAFRH  60
PPLDGHAGVP SESAQCSAPV NKTNAPCYFY FNGFCNKGDR CPFMHGSDGN APAGKSTKAA  120
STSTDAPFVE KKISAGNETQ SAQTETHLNP YESVPKVAMN LNSEFKEGLD EPVPNNVSQQ  180
CASPQIAVCG YDEAPVIRSE SLLIADGFIQ SRSHFEADQS SEEQVEDDIE PEERWESSPG  240
FDVLVGDKSE NLGYDDDAEY LLDLDGEQRE LSSCFLGYDF EDPIKYDPSH PDLKQYERDF  300
YDGYDPDDKH LFNNVRRDPG HSRDSMLDSI LFRKRKHVPM ELTVGDHNGM DLRDHLRRHR  360
VIDGCPITGL SRRRGSSRLI GCSQERPHRH GMGQRLHGRM ASEVGMSTIE SVKKGTFSHG  420
ATANQRGLLR RSQQHRSKKV SRKKILSKHP FSSEVTRKPV TRERRSTQES TTFTGPKTLA  480
QIKEEKKKAE ENGVCIWKVG HSSRTTSTDF QAPKTLSEIL KDKRKLDFVR DSDNSGY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023927549.1	0.0	zinc finger CCCH domain-containing protein 34-like
TrEMBL	A0A2N9I4B5	0.0	A0A2N9I4B5_FAGSY; Uncharacterized protein
STRING	cassava4.1_005162m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13092	18	23