 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
maker-scaffold00805-augustus-gene-0.56-mRNA-1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
| Family |
WOX |
| Protein Properties |
Length: 309aa MW: 34370 Da PI: 6.7772 |
| Description |
WOX family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| maker-scaffold00805-augustus-gene-0.56-mRNA-1 | genome | THGP | View Nucleic Acid |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 61.7 | 1.1e-19 | 29 | 89 | 3 | 57 |
--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
Homeobox 3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
+R+t+t++q+++L++l+++ r psae++++++++l +++ ++V++WFqN++a+e++
maker-scaffold00805-augustus-gene-0.56-mRNA-1 29 TRWTPTTDQIRILKDLYYNngVRSPSAEQIQRISARLrkygKIEGKNVFYWFQNHKARERQ 89
6*****************8678*************************************97 PP
|
| 2 | Wus_type_Homeobox | 112.8 | 1.8e-36 | 28 | 91 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
tRWtPt++Qi+iL++ly+ +G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
maker-scaffold00805-augustus-gene-0.56-mRNA-1 28 ITRWTPTTDQIRILKDLYYnNGVRSPSAEQIQRISARLRKYGKIEGKNVFYWFQNHKARERQKK 91
58***************9779*****************************************96 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 309 aa
Download sequence Send
to blast |
MEPQNQQQQA LNEDGGSGKG GYLCRPSITR WTPTTDQIRI LKDLYYNNGV RSPSAEQIQR 60
ISARLRKYGK IEGKNVFYWF QNHKARERQK KRLNSDVPMQ RGVGVGNTNW NSTPEESIHT 120
KYPLPNITSG ISASSLSSGV ITVGHMGNYG YGSVTMEKSF RVSIYSLHSL FNACLSVCLK 180
QNCSISNGGN NGGVGGSIGH NSGCVGVDPY SSSYSTFFDK RRLMEENLGG QEDEEEEEEE 240
VEAGEKETLP LFPMHAEDIN GFCNMNPYTT NGHYMYTSCY RSADDGINGS RTSLELSLNS 300
YCHRSSPYH
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269|PubMed:12208843}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AM447418 | 1e-79 | AM447418.2 Vitis vinifera contig VV78X032979.11, whole genome shotgun sequence. |
