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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold00803-snap-gene-0.44-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | ERF | ||||||||
Protein Properties | Length: 143aa MW: 15077.6 Da PI: 9.1993 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.2 | 1.2e-19 | 12 | 62 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+WvAeIr+p + r kr +lg+f ta +Aa a+++a+++++g maker-scaffold00803-snap-gene-0.44-mRNA-1 12 CNYRGVRQRT-WGKWVAEIREP---N-RgKRLWLGTFPTAIGAALAYDEAARAMYG 62 56*****999.**********8...3.35************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.8E-14 | 12 | 62 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.96E-31 | 12 | 72 | No hit | No description |
PROSITE profile | PS51032 | 22.155 | 13 | 70 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.42E-21 | 13 | 70 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-32 | 13 | 71 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-36 | 13 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-9 | 14 | 25 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-9 | 36 | 52 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MKGKGGPENS RCNYRGVRQR TWGKWVAEIR EPNRGKRLWL GTFPTAIGAA LAYDEAARAM 60 YGSAARLNFP NVKISSFLKD SPKDSSLVAT TSGSSSVATA GGSESSDESE GSASEGIDLN 120 PVSPCVKHDD GVGESRANSS PPR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-18 | 13 | 70 | 5 | 63 | ATERF1 |
3gcc_A | 2e-18 | 13 | 70 | 5 | 63 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023886168.1 | 3e-80 | putative dehydration-responsive element-binding protein 2H | ||||
TrEMBL | A0A2N9IY71 | 2e-75 | A0A2N9IY71_FAGSY; Uncharacterized protein | ||||
STRING | XP_008230119.1 | 5e-50 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1175 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18450.1 | 7e-35 | ERF family protein |