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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
maker-scaffold00779-augustus-gene-0.29-mRNA-1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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| Family |
LBD |
| Protein Properties |
Length: 233aa MW: 25347.1 Da PI: 8.6918 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| maker-scaffold00779-augustus-gene-0.29-mRNA-1 | genome | THGP | View Nucleic Acid |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 80.4 | 3e-25 | 2 | 117 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeer..... 54
+C++C+vlr++C+++C+l++++ p++q++++ +v+k+FG++ ++++++++pe++r
maker-scaffold00779-augustus-gene-0.29-mRNA-1 2 SCNGCRVLRKGCSDNCMLRQCLkwidkPQAQAHATLFVAKFFGRACLMSFISTVPEHHRpgayi 65
6*************************************************************** PP
DUF260 55 .........edamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97
+++sl++eA r+ +Pv+G+vg++++++++++++++e++l+
maker-scaffold00779-augustus-gene-0.29-mRNA-1 66 qtyisvefcVSLFQSLLFEAVGRTVNPVNGVVGLLWTGNWNVCRAAVETVLR 117
********99************************************998775 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 233 aa
Download sequence Send
to blast |
MSCNGCRVLR KGCSDNCMLR QCLKWIDKPQ AQAHATLFVA KFFGRACLMS FISTVPEHHR 60
PGAYIQTYIS VEFCVSLFQS LLFEAVGRTV NPVNGVVGLL WTGNWNVCRA AVETVLRGGV 120
LQAQPEFLGG QVSMLELPNP SKAKAGNNNC VSSCLLGSNK KGASDKVENL QQLDLDLCLT 180
AGSLQRRTEI DGGRRRKRAA TPSTEESEMT SLGSSNSCGT EGGDQRKILR LFV
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