PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00700-augustus-gene-0.43-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C3H
Protein Properties Length: 760aa    MW: 85059.6 Da    PI: 5.4566
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00700-augustus-gene-0.43-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.7e-07148170427
                                                    ---SGGGGTS--TTTTT-SS-SSS CS
                                        zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                                                    ++C f+++ G C  GdrC F Hgp
  maker-scaffold00700-augustus-gene-0.43-mRNA-1 148 VPCIFYQK-GLCLKGDRCAFLHGP 170
                                                    69******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.535382IPR000571Zinc finger, CCCH-type
SMARTSM003560.00445481IPR000571Zinc finger, CCCH-type
PfamPF156632.0E-1055109No hitNo description
PROSITE profilePS5010311.41384110IPR000571Zinc finger, CCCH-type
SMARTSM003560.286109IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511144171IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-5144170IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-5145169IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4149170IPR000571Zinc finger, CCCH-type
PfamPF146080.073149169No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 760 aa     Download sequence    Send to blast
MFAATQQPQH QHQQHQHQKQ QQQQPPHQQH QQQQQQVPNT AASTISSAQE EALKSNTDCV  60
YFLASPLTCK KGSECEYRHS DYARLNPRDC WYWLNGNCLN PKCSFRHPPL DAALGTQAAT  120
SAGSSLPITP TAATPAAQAP YGSSKQAVPC IFYQKGLCLK GDRCAFLHGP NPTTSNKVPQ  180
MPGAIHVTDS LAPKKTFGGP EKFTQEQKIP QINISKSVGL PPEAKPSPKT EATFPRNVVG  240
VERNVPLPTR LDDETSRYKA THVPPVINGN SISRSSRSQQ AHVPEDYSFP NGKDGDEFLR  300
ESSPGFDVLV DNELGDSDYY HGEDQFGRTR GHEGRSLNPV NEYDISHSAD YNSIADVDRE  360
RFPDPRGHGS YDHMQGQYAW EQQGASSERM FVEPAHLERR RGYPKSDSPD HVDESDLRHH  420
LSKQRRHSGL RSVVSHGHNN HVEERSYRSS SRRDALNLPP NESSLSNRLR GRIKLPGRSP  480
VNGTDLRPER ESDRGRNWDR LSPGRPQISH QGRLRDRIKG RVQEDYNIEG RNIKGPRIWR  540
EITDESGDFA RPKRLAELKV VKSSDGKEQQ SLGKRKNLED HQQSEGDLSF EGPKPLSEIL  600
KRKRGAGASS SGKSSVYKED NNQSEVKESL ISGSENAYTQ SAKEEAFSHL FGSEEDFKSA  660
ADVSVGTVAE KTDEASGQPS QAPDLNEFEA EDGMIFDENI EDQELEADDQ RDVDGEYEYE  720
QVDEEGEYNY EEGDNADPEA EYLDDEDGDD FAKKIGVMFS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023879089.10.0zinc finger CCCH domain-containing protein 17
TrEMBLA0A2N9IK330.0A0A2N9IK33_FAGSY; Uncharacterized protein
STRINGXP_008220996.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF92273137