PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00681-snap-gene-0.20-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 585aa    MW: 63932 Da    PI: 8.429
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00681-snap-gene-0.20-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.21.2e-17282331255
                                                HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                        HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                                r +h++ E+rRR++iN++f+ Lrel+P++    ++K +Ka+ L +++eYI+ Lq
  maker-scaffold00681-snap-gene-0.20-mRNA-1 282 RSKHSATEQRRRSKINDRFQMLRELIPNS----DQKRDKASFLLEVIEYIQFLQ 331
                                                889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.2E-24278353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-19279352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.257280330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-15282331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.37E-16282335No hitNo description
SMARTSM003535.7E-14286336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MELPQPRPFG TEGRKPTHDF LSLYTHSTAQ QDPRPSSQGS YLKTHDFLQP LERIGKTSAK  60
EETTAEISSV EKPPPPAPPP SVEHILPGGI GTYTISHISS YFNQRVPKPE GSIYTVAQTS  120
STDRNDENSN SSSYTGSGFT LWEESALKKG KTGKENMGEK PVTREAGTKL SGQQWTTSSE  180
RPSLSSNSNN NNNNNHRNSF SSLSSSQATG QKNKSKSFME MIKSAQGSTH EDDIIIDDEE  240
EFVLKKEPST PVATPATTTP HIGELRVKVD GKSSDQKAST PRSKHSATEQ RRRSKINDRF  300
QMLRELIPNS DQKRDKASFL LEVIEYIQFL QEKVHKFEGS YQGWSHEPAK LMPWRNNHRP  360
AESYVDQSQG VNSVAAPALV FAGKFDEKNI CVSPTIAGSA QNPVESDLST ATTFKQMDNH  420
PIITNKGIPF PMSLQPNVFT PVRISGAVPQ LPPKLASDAE NISSHPQPQL CQLRSCPTDG  480
GTTSDKPKEQ DLTVEGGTIS ISSVYSQGLL STLTEALQSS GVDLSQASIS VQIELGKQSN  540
GRATRPPSVV KVNEVPTSNQ GIIRSRFASA EDSDQARKKL KTGKS
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023909148.10.0transcription factor BIM1 isoform X1
RefseqXP_023909149.10.0transcription factor BIM1 isoform X2
SwissprotQ9LEZ31e-127BIM1_ARATH; Transcription factor BIM1
TrEMBLA0A2I4EX350.0A0A2I4EX35_JUGRE; transcription factor BIM1-like
STRINGXP_002514597.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72523145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.41e-126bHLH family protein
Publications ? help Back to Top
  1. Liang T, et al.
    UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis.
    Dev. Cell, 2018. 44(4): p. 512-523.e5
    [PMID:29398622]