PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00669-augustus-gene-0.35-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C3H
Protein Properties Length: 754aa    MW: 82701.8 Da    PI: 6.9749
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00669-augustus-gene-0.35-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.81.6e-07169188525
                                                    --SGGGGTS--TTTTT-SS-S CS
                                        zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                                                    +C+ffa+ G+C  G++C+F H
  maker-scaffold00669-augustus-gene-0.35-mRNA-1 169 ICDFFAK-GWCIKGSSCRFLH 188
                                                    8******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0076164190IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.986164191IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5166188IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-5169188IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 754 aa     Download sequence    Send to blast
MGSEGNDGQL RSGHSTLEKA EVKIPSNTGA VKESGGNFIF SSPSNEPLTT KKVDGKGIEA  60
LPEEKASKDH SESHSNTKAH LCNKEILNAN TSFLSSINGN EMTDTIPMSS HSVEEANGVM  120
NSKEMKRIDL QSGDDKKRLA SRLAAPDTRT GGLSPGAEIK DGNDCPAVIC DFFAKGWCIK  180
GSSCRFLHIK KGDLNSTTQK HEADVASVNW KREAQLDEGL REISERSMSP GFPEPLASSV  240
GNSSSHLETI LPKDLGESQR WNEFHGQHKL PLLKKEDSSL CITPDSQQLP SSKDDPSFVS  300
RFKDVGRDIQ TLNWPADHAS SNGTGSSMVR NSLLPEYGFS SSGSDLLSRN YHSGIFSSHS  360
SNMEEMASVR SQHKHNDFTL PLRCHSRNLT SNTSLPTTGM LPSHSISTWT ASSSPFTFSS  420
FSISHLGSQK LLDGEKECHA SRSSSLLQFS SPFPTSESKN LPVTNVPLCS AEHKTKFSSN  480
DWEPSVPFRP SFFIPPMSIS SPGSQNDPLR DSTESPKIGD ESFNISLYGH GSSIMDKSHL  540
QKYGDSVLPG TLGPECNDDT TSVSSHNKFY DNVLDKSCHA IERDSLATEA DTGGTSVDWK  600
NGRMPKEENL CGTSHANDTT TKRRKLNDEH ASSHQNDGSR HRKDLKLSRA RQDNEMDVGP  660
KMDGNVHKES KAQRHFRAAL IDLVKELLKP KWRDGHLSKD AHNMIVKKVV DKVLSTLQSH  720
QIPPTMELVE QYLSSFGSKI TKLVEGYVDK YGKS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023929658.10.0protein FRIGIDA-ESSENTIAL 1-like
TrEMBLA0A2N9EJB70.0A0A2N9EJB7_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108052733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-35C3H family protein