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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
maker-scaffold00661-snap-gene-0.41-mRNA-1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family |
SRS |
Protein Properties |
Length: 273aa MW: 29458.4 Da PI: 6.5648 |
Description |
SRS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
maker-scaffold00661-snap-gene-0.41-mRNA-1 | genome | THGP | View Nucleic Acid |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF702 | 230.8 | 2.3e-71 | 50 | 203 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaea 70
g++sCqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpa+krrerqqqlaa++++++++++++
maker-scaffold00661-snap-gene-0.41-mRNA-1 50 IGGISCQDCGNQAKKDCIHMRCRTCCKSRGFDCHTHVKSTWVPASKRRERQQQLAALQQQQQHQQHQH 117
5789****************************************************999998887444 PP
DUF702 71 askrkrel..kskkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtav 136
+ + + + k ++++ ++st ++s + le+ ++P+evss+avfrcvrvss+dd ++++aYqtav
maker-scaffold00661-snap-gene-0.41-mRNA-1 118 QLELRGGEhpKRHRENPSTSTLARLHTSASGLEVGNFPSEVSSPAVFRCVRVSSIDDTDDQYAYQTAV 185
43322222122233333334444556778899************************************ PP
DUF702 137 sigGhvfkGiLydqGlee 154
+igGhvfkGiLydqG+e+
maker-scaffold00661-snap-gene-0.41-mRNA-1 186 NIGGHVFKGILYDQGPET 203
****************96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 273 aa
Download sequence Send
to blast |
MAGFFSLGGG RGRGRGGSSE EDQETNNNNP PNEIPPESLL HQEEEEEEGI GGISCQDCGN 60 QAKKDCIHMR CRTCCKSRGF DCHTHVKSTW VPASKRRERQ QQLAALQQQQ QHQQHQHQLE 120 LRGGEHPKRH RENPSTSTLA RLHTSASGLE VGNFPSEVSS PAVFRCVRVS SIDDTDDQYA 180 YQTAVNIGGH VFKGILYDQG PETNYSMGGE SSSGGGGVHP LNLIAGATTS PTTTHGGAAA 240 MVSSAMALLD PSLYPAPLNS FMAGTQFFQP PRS
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT3G51060.1 | 2e-68 | Lateral root primordium (LRP) protein-related |