PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold00656-augustus-gene-0.49-mRNA-2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | MYB_related | ||||||||
Protein Properties | Length: 679aa MW: 75284.1 Da PI: 8.8421 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.3 | 1.5e-07 | 580 | 629 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ maker-scaffold00656-augustus-gene-0.49-mRNA-2 580 RRPFSVTEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 629 678999********************9988889**************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54236 | 1.79E-6 | 376 | 482 | IPR029071 | Ubiquitin-related domain |
PROSITE profile | PS51294 | 15.654 | 575 | 634 | IPR017930 | Myb domain |
SMART | SM00717 | 3.5E-7 | 579 | 632 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-10 | 580 | 630 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 1.77E-16 | 581 | 631 | No hit | No description |
SuperFamily | SSF46689 | 1.71E-15 | 581 | 662 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 679 aa Download sequence Send to blast |
MPRATRSARK RGTFRKRTED NQMCAFDLLA TVAGNIWLEK ESSPTSSNTS NEKNGCAFVQ 60 KAWENEDKPV KIEPSFQESS DKRVLVSELV HQAGDQNFSY RESPLPQNDV HSGLASVLTT 120 ECSEVFVAEK LVNGENNNEM GSFTSNVDLG FSGYRDSGNC KLDCENKLII KDDLHKTGKV 180 PIGIGADMCS LEDPVVCDGR PPALVSSDSS VKVPLCGDHI PCSSFPAIRD DVKIVSRDDD 240 ENSSGCTHPS TIAKSSRPVS RIADRRIRKI LASKYWKVSS KLKEETLSNV DGDLKPIFRN 300 RKGYYKRQRS QMNIPFKKRK IFQRSSVSNS DRWISYGGNS HSTEKGINGD DLGSCLKMHG 360 ASGTSSSLVG QHTSIQSRDS YVKLRIKSFR VPELLIEMSE TATVGSLKDI IFRKSHVTYA 420 EAQRAVMEAV TSILGGGLRV GVLLQGKKVR DDNKTLQQTG IAHDYPLDAL GFTLEPNPAQ 480 NPPPLCPRDS SCMLPCDTPQ PLTRIKGDSH ASPELHAANL GTFIESDHDS APSPTDTSVD 540 KSTTDSKALV AVSAMDVDEL AVVPVHRKLK RSEMAQRRIR RPFSVTEVEA LVQAVEKLGT 600 GRWRDVKLRA FDNAKHRTYV DLKDKWKTLV HTARISPQQR RGEPVPQELL DRVLSAHAYW 660 SQQQAKQQLK QQPETCLLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 4e-57 | 564 | 670 | 1 | 107 | Telomere binding protein TBP1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT094130 | 7e-71 | BT094130.1 Soybean clone JCVI-FLGm-18O23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023904359.1 | 0.0 | telomere repeat-binding protein 5-like isoform X1 | ||||
TrEMBL | A0A2I4EV52 | 0.0 | A0A2I4EV52_JUGRE; telomere repeat-binding protein 5-like isoform X1 | ||||
STRING | VIT_06s0004g04940.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07540.1 | 1e-122 | TRF-like 2 |