PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00648-snap-gene-0.57-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family SBP
Protein Properties Length: 319aa    MW: 34788.6 Da    PI: 9.033
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00648-snap-gene-0.57-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.28.4e-4225101278
                                                -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-- CS
                                        SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakh 69 
                                                C v+gC++dls++++yhrrhkvCe hsk+p+v+++g+eqrfCqqCsrfh+l efDe+krsCr+rL++h
  maker-scaffold00648-snap-gene-0.57-mRNA-1  25 CLVDGCNSDLSKCRDYHRRHKVCELHSKTPKVTIRGQEQRFCQQCSRFHSLGEFDEGKRSCRKRLDGH 92 
                                                ******************************************************************** PP

                                                -----S--- CS
                                        SBP  70 nerrrkkqa 78 
                                                n+rrrk+q+
  maker-scaffold00648-snap-gene-0.57-mRNA-1  93 NRRRRKPQP 101
                                                ******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.8E-351886IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.1462299IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.96E-3923104IPR004333Transcription factor, SBP-box
PfamPF031109.7E-312598IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MESSSSSGST KRARAPVNGT QVPLCLVDGC NSDLSKCRDY HRRHKVCELH SKTPKVTIRG  60
QEQRFCQQCS RFHSLGEFDE GKRSCRKRLD GHNRRRRKPQ PDSLSLNSGR FHSSYQGTRI  120
LSFTSPQIFP QGAVVSSPWT GAVKAESDAP VLYNSYSQLN YCDRKNSINP GSLCDNYKGG  180
KQFPFAQGSS SSLLGATISQ PLLDANFASS NDSRSQKVFS NGLNQVIDSD CALSLLSSTP  240
TETRQVGLSH MVQSNPIHTG QSLVPSLHYN GFGMEVKNSS ALGSSNTNIH CQGMFSIGPH  300
DSDGSSATGP NQTLSFLWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-282298884squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18198KRSCRKRLDGHNRRRRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4599927e-44AM459992.1 Vitis vinifera contig VV78X036999.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023870642.10.0squamosa promoter-binding-like protein 16 isoform X1
TrEMBLA0A2I4DIR61e-160A0A2I4DIR6_JUGRE; teosinte glume architecture 1-like
STRINGVIT_01s0010g03910.t011e-134(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25913378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.13e-53SBP family protein