 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
maker-scaffold00643-augustus-gene-0.33-mRNA-1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 329aa MW: 36994.7 Da PI: 4.459 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| maker-scaffold00643-augustus-gene-0.33-mRNA-1 | genome | THGP | View Nucleic Acid |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 60.8 | 2.2e-19 | 92 | 145 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++++q++ Le+ Fe ++++ +++ +LAk+lgL+ rqV +WFqNrRa++k
maker-scaffold00643-augustus-gene-0.33-mRNA-1 92 KKRRLSADQVQFLEKSFEVENKLEPDRKVQLAKELGLQPRQVAIWFQNRRARWK 145
56689************************************************9 PP
|
| 2 | HD-ZIP_I/II | 128 | 4e-41 | 91 | 182 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdye 64
ekkrrls++qv++LE+sFe e+kLep+rKv+la+eLglqprqva+WFqnrRAR+ktkq+Ek+ye
maker-scaffold00643-augustus-gene-0.33-mRNA-1 91 EKKRRLSADQVQFLEKSFEVENKLEPDRKVQLAKELGLQPRQVAIWFQNRRARWKTKQMEKEYE 154
69************************************************************** PP
HD-ZIP_I/II 65 aLkraydalkeenerLekeveeLreelk 92
+L+++y++lk++ e+L ke+++L++e+
maker-scaffold00643-augustus-gene-0.33-mRNA-1 155 VLQDSYNSLKTDYENLLKEKDKLKAEVV 182
************************9875 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 329 aa
Download sequence Send
to blast |
MAGGRVYSSG TGGNSGSNLS VLFQNQKGAC ASEPLDSLFL SGSSPSFLGS RSMVSFADVR 60
GGNGSNRPFY RAYDHDDNGD EDLEDYLHQP EKKRRLSADQ VQFLEKSFEV ENKLEPDRKV 120
QLAKELGLQP RQVAIWFQNR RARWKTKQME KEYEVLQDSY NSLKTDYENL LKEKDKLKAE 180
VVLLQDKLLL REKERGISEL SDTNKLSQEP LQKPVAESVS EGEVSKVSIV ACKQEDMSSA 240
RSDIFDSDSP HYTDGVHSSL LDPGDSSNVF EPDQSDLSQD EVDNLNLGKS LLPAYIFPKL 300
EDIDYSDPSE NSCNFGFPAD DHAFWSWSY
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 139 | 147 | RRARWKTKQ |
| 2 | 189 | 194 | LREKER |
