PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00643-augustus-gene-0.33-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family HD-ZIP
Protein Properties Length: 329aa    MW: 36994.7 Da    PI: 4.459
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00643-augustus-gene-0.33-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.82.2e-1992145356
                                                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                                       Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                                    k+++++++q++ Le+ Fe ++++  +++ +LAk+lgL+ rqV +WFqNrRa++k
  maker-scaffold00643-augustus-gene-0.33-mRNA-1  92 KKRRLSADQVQFLEKSFEVENKLEPDRKVQLAKELGLQPRQVAIWFQNRRARWK 145
                                                    56689************************************************9 PP
2HD-ZIP_I/II1284e-4191182192
                                    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdye 64 
                                                    ekkrrls++qv++LE+sFe e+kLep+rKv+la+eLglqprqva+WFqnrRAR+ktkq+Ek+ye
  maker-scaffold00643-augustus-gene-0.33-mRNA-1  91 EKKRRLSADQVQFLEKSFEVENKLEPDRKVQLAKELGLQPRQVAIWFQNRRARWKTKQMEKEYE 154
                                                    69************************************************************** PP

                                    HD-ZIP_I/II  65 aLkraydalkeenerLekeveeLreelk 92 
                                                    +L+++y++lk++ e+L ke+++L++e+ 
  maker-scaffold00643-augustus-gene-0.33-mRNA-1 155 VLQDSYNSLKTDYENLLKEKDKLKAEVV 182
                                                    ************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.84E-2078149IPR009057Homeodomain-like
PROSITE profilePS5007117.49187147IPR001356Homeobox domain
SMARTSM003897.6E-2090151IPR001356Homeobox domain
PfamPF000461.2E-1692145IPR001356Homeobox domain
CDDcd000861.98E-1892148No hitNo description
Gene3DG3DSA:1.10.10.609.7E-2094154IPR009057Homeodomain-like
PRINTSPR000315.1E-6118127IPR000047Helix-turn-helix motif
PROSITE patternPS000270122145IPR017970Homeobox, conserved site
PRINTSPR000315.1E-6127143IPR000047Helix-turn-helix motif
PfamPF021831.1E-13147188IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MAGGRVYSSG TGGNSGSNLS VLFQNQKGAC ASEPLDSLFL SGSSPSFLGS RSMVSFADVR  60
GGNGSNRPFY RAYDHDDNGD EDLEDYLHQP EKKRRLSADQ VQFLEKSFEV ENKLEPDRKV  120
QLAKELGLQP RQVAIWFQNR RARWKTKQME KEYEVLQDSY NSLKTDYENL LKEKDKLKAE  180
VVLLQDKLLL REKERGISEL SDTNKLSQEP LQKPVAESVS EGEVSKVSIV ACKQEDMSSA  240
RSDIFDSDSP HYTDGVHSSL LDPGDSSNVF EPDQSDLSQD EVDNLNLGKS LLPAYIFPKL  300
EDIDYSDPSE NSCNFGFPAD DHAFWSWSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139147RRARWKTKQ
2189194LREKER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023894305.10.0homeobox-leucine zipper protein HAT5-like
TrEMBLA0A2I4FIU90.0A0A2I4FIU9_JUGRE; homeobox-leucine zipper protein HAT5-like
STRINGEOY217131e-172(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-41homeobox 1