PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00575-augustus-gene-0.28-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 266aa    MW: 30929.7 Da    PI: 8.0689
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00575-augustus-gene-0.28-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.53.6e-141461148
                                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                                   +g+W+ eEd +l  +++++G  +W+  ++  g+ R++k+c++rw +yl
  maker-scaffold00575-augustus-gene-0.28-mRNA-1 14 KGAWSVEEDNKLRAYIQRFGHWNWRELPKFAGLSRCGKSCRLRWMNYL 61
                                                   79******************99************************97 PP
2Myb_DNA-binding49.97.1e-1667111147
                                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                                    rg+ T+eE+ ++++++++lG++ W+ Ia+ +  gRt++++k++w+ +
  maker-scaffold00575-augustus-gene-0.28-mRNA-1  67 RGNYTKEEERIIIKLHEELGNK-WSMIAASLT-GRTDNDIKNHWHAH 111
                                                    899*******************.********9.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.597961IPR017930Myb domain
SuperFamilySSF466898.81E-3011108IPR009057Homeodomain-like
SMARTSM007172.1E-111363IPR001005SANT/Myb domain
PfamPF002498.0E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-211568IPR009057Homeodomain-like
CDDcd001672.23E-81661No hitNo description
PROSITE profilePS5129423.8262116IPR017930Myb domain
SMARTSM007173.7E-1566114IPR001005SANT/Myb domain
PfamPF002496.2E-1467111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2469114IPR009057Homeodomain-like
CDDcd001673.50E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MVRAPFYDKN GLKKGAWSVE EDNKLRAYIQ RFGHWNWREL PKFAGLSRCG KSCRLRWMNY  60
LRPGVKRGNY TKEEERIIIK LHEELGNKWS MIAASLTGRT DNDIKNHWHA HLKKCSKNNP  120
TISRIKTQSK EAYQHDADIA RKTETDNYVS SSPPYQVMES SQLPLEKSSS EFRSLSFDNA  180
PLFGINWIAE DNLTTLETPE QSFNDFWTEP FIMDNTYVQN NNLVSLAEGG FSTSQPWYNE  240
GIDSIYKAMQ EIKNYHGINV DPYLLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-251211425126MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023872079.11e-176transcription factor MYB13-like
TrEMBLA0A2N9J0V51e-129A0A2N9J0V5_FAGSY; Uncharacterized protein
STRINGPOPTR_0019s14130.13e-87(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.21e-52myb domain protein 9