PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00547-snap-gene-0.28-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 1432aa    MW: 159922 Da    PI: 9.1743
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00547-snap-gene-0.28-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.0002213411364223
                                                 EET..TTTEEESSHHHHHHHHHHT CS
                                    zf-C2H2    2 kCp..dCgksFsrksnLkrHirtH 23  
                                                 +Cp   Cgk F ++ +L++H r+H
  maker-scaffold00547-snap-gene-0.28-mRNA-1 1341 VCPvkGCGKKFFSHKYLVQHRRVH 1364
                                                 69999*****************99 PP
2zf-C2H212.60.0004214001426123
                                                 EEET..TTTEEESSHHHHHHHHHH..T CS
                                    zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                                                 y+C+   Cg++F+  s++ rH r+  H
  maker-scaffold00547-snap-gene-0.28-mRNA-1 1400 YVCGepGCGQTFRFVSDFSRHKRKtgH 1426
                                                 89********************99666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005459.6E-172061IPR003349JmjN domain
PROSITE profilePS5118314.6862162IPR003349JmjN domain
PfamPF023758.9E-142255IPR003349JmjN domain
SMARTSM005582.3E-49205374IPR003347JmjC domain
PROSITE profilePS5118432.547205374IPR003347JmjC domain
SuperFamilySSF511972.03E-25221390No hitNo description
PfamPF023733.6E-36238357IPR003347JmjC domain
SMARTSM003552713171339IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.90213401369IPR007087Zinc finger, C2H2
SMARTSM003550.003713401364IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.9E-613411368IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028013421364IPR007087Zinc finger, C2H2
SuperFamilySSF576671.94E-913561398No hitNo description
Gene3DG3DSA:3.30.160.604.1E-813691394IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.63713701399IPR007087Zinc finger, C2H2
SMARTSM003550.001713701394IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028013721394IPR007087Zinc finger, C2H2
SuperFamilySSF576673.19E-813881422No hitNo description
Gene3DG3DSA:3.30.160.604.3E-913951423IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.11514001431IPR007087Zinc finger, C2H2
SMARTSM003550.5414001426IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028014021426IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0035067Biological Processnegative regulation of histone acetylation
GO:0040010Biological Processpositive regulation of growth rate
GO:0045815Biological Processpositive regulation of gene expression, epigenetic
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
GO:0071558Molecular Functionhistone demethylase activity (H3-K27 specific)
Sequence ? help Back to Top
Protein Sequence    Length: 1432 aa     Download sequence    Send to blast
MAASEAAQEV VLPWLKTLPL APEYRPSLSE FQDPISYIFK IEKEASKYGI CKIVPPVPPS  60
PKKTVIPNLN QSLLARNPDS DPKSAPTFTT RQQQIGFCPR KPRPVQRPVW QSGECYTFQE  120
FEAKAKAFEK AYLKKCGGSG SGNGNGKKTT PLSALEIETL YWKATVDKPF RVEYANDMPG  180
SAFVPLDSKK SKISSSSSSS CEGVSLGETA WNMRGVSRAN GSLLKFMKEE IPGVTSPMVY  240
VAMMFSWFAW HVEDHDLHSL NYLHMGAGKT WYGVPREAAV AFEEVVRVHG YGGEINPLVT  300
FATLGEKTTV MSPEVFIGAG VPCCRLVQNA GEFVVTFPRA YHTGFSHGFN CGEAANIATP  360
EWLRVAKDAA IRRASINYPP MVSHFQLLYD LALALHSRMP MGNSAGPRSS RLKDKKKGEG  420
ETVVKELFAQ NVVQNNELLH ILGKGSSIVL LPRSSSDVSV CSKLRVGSQL RVNPTLTPGL  480
CSSKEVNQGI GQRLFSCVTC GILSFACVAI VQPREPASRY LMTADCSFLN DWAVGSGITG  540
NGFTVANGDA ITSDQNTHPG SFTSKTSFAN QPSIGLFDVP VQSLHGQHQM EDQSYEVVSN  600
TETQREPSAL GLLAMTYGNS SDSEDDQGEP DFPACADKKK LTNSSSESIY QGDNSGLPSM  660
QDCPQGATGV RSPSLSRHGV EDGSNQTSDC SAEFRTDDLA SRRSDGLMDT FSDPITVSHV  720
SSDCSLDVHD VEQTKFGKEN VPRENKNMSF APRSDEDSSR MHVFCLEHAK EVEKQLRPIG  780
GVHILLLCHP DYPKIVDDAK SLAEDMGIDY PWNNITFRDA TKEDEDRIRS ALDSQEAIPG  840
NGDWAVKLGI NLFYSANLSR SPLYSKQMPY NSVIYNAFGR CSPASSPKKA KVYRRRSGRQ  900
RKVVAGKWCG KVWMSHQVHP FLAKGDSDEE EEEDMSFQTW TMPDEKLEIK SESTHKSETT  960
MVARKYGRKR KMTVESGSSK KAKFIDRGDA FFDYSAEDNS HQQGRTLRGK LAKSIERDEA  1020
VSDDSLDNYS HELQRTSKSK EAFFDEREDA VSDDSLIDDS HQQHRRIHRG KQSKCFDKED  1080
AISDSSLGHN FHQHNRRIVK SKIRREAFSD DSLEGNSHQQ IKRYNRRNQA KCIEREDAVL  1140
DDSLGVNSHK QHRRLPKIKQ ATSIEREDAV SDVPLDDDSH QQHRRILRSK PMRAEISQPM  1200
KKGPPRRVKK GTSWATKQVP RRPIKRESPQ LMKQQTPRLR NNQSERNSSH IGLLVEEDQG  1260
GPSTRLRKRT KKTVKESEAK PKAKKQASRI KVRKNASVVK APAGHNDPKI GDGEVEFLCD  1320
IEGCTMSFGS KHELVLHKRN VCPVKGCGKK FFSHKYLVQH RRVHLDERPL RCPWKGCKMT  1380
FKWAWARTEH IRVHTGARPY VCGEPGCGQT FRFVSDFSRH KRKTGHSAKK GR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A1e-75123976355Transcription factor jumonji (Jmj) family protein
6ip4_A1e-75123976355Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1886901PKKAKVYRRRSGRQRK
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269|PubMed:24280387}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00608ChIP-seqTransfer from AT3G48430Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:24280387}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023917830.10.0lysine-specific demethylase REF6
SwissprotQ5N7120.0JM705_ORYSJ; Lysine-specific demethylase JMJ705
TrEMBLA0A2N9F7U20.0A0A2N9F7U2_FAGSY; Uncharacterized protein
STRINGevm.model.supercontig_4.490.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56483250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.10.0relative of early flowering 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]