PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00491-augustus-gene-1.11-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family G2-like
Protein Properties Length: 363aa    MW: 40986 Da    PI: 6.1986
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00491-augustus-gene-1.11-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.93.9e-3275128255
                                        G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                                    prlrWtpeLH +Fv+ave+LGG+e+AtPk +l+lm++kgL+++hvkSHLQ+YR+
  maker-scaffold00491-augustus-gene-1.11-mRNA-1  75 PRLRWTPELHLCFVHAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRS 128
                                                    8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.28171131IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-3071129IPR009057Homeodomain-like
SuperFamilySSF466895.55E-1573129IPR009057Homeodomain-like
TIGRFAMsTIGR015579.8E-2375130IPR006447Myb domain, plants
PfamPF002491.1E-976127IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MKSGDDENTQ ASKTSSPSNK SDDDDDDDED EGDEEVDETG KPKNAGSSSN ITVENSSEKK  60
SASGSVRQYV RSKMPRLRWT PELHLCFVHA VERLGGQERA TPKLVLQLMN IKGLSIAHVK  120
SHLQMYRSKK MDDHNRVPNQ GLFLENGDHN IYNLSQLPML QNFNQRPSGL RYGDASWRGH  180
DKQIYGPYMG RAALDRTRNG LYGSVTEKIF ASNNTSTSAN FNLHKRDSSF NGQATWPIRH  240
QTLNEFKWFQ GSKQIPLKQS SLETNLITQL QERGTDDQGI YLNNSGSPRR KIQEAQNTMK  300
RKALDNTDHG GLDLNLSLKA ASNNNEFEKG LDGDDKVEGR RWSFEAFEDD EYSGSDFMNE  360
TIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A6e-1976130357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-1976130357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-1976130357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-1976130357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00301DAPTransfer from AT2G40260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018821715.11e-116PREDICTED: uncharacterized protein LOC108991786
TrEMBLA0A2I4EQN11e-115A0A2I4EQN1_JUGRE; uncharacterized protein LOC108991786
STRINGPOPTR_0010s19310.11e-105(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23783482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.17e-51G2-like family protein