PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

maker-scaffold00458-snap-gene-0.40-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

bHLH

Protein Properties

Length: 418aa MW: 46894.6 Da PI: 7.4811

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold00458-snap-gene-0.40-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.5	1e-12	297	340	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + Er+RR+ri +++++Lr l+Pk +K++ a+i+ A+eYI++Lq maker-scaffold00458-snap-gene-0.40-mRNA-1 297 ATERKRRHRITDGLFTLRALVPKI-----TKMDRAAIVGDAIEYIQELQ 340 78*******************7.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	1.7E-19	15	162	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	14.253	290	339	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-15	292	356	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.37E-13	293	344	No hit	No description
SMART	SM00353	1.7E-14	296	345	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-10	296	340	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.1E-15	297	356	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence Send to blast
MEETMRGLER TVEWLRPFVQ TKTWDYCVVW KLGDDPSRFI EWVGCCCSGG YGFVAKEERG 60 VEHHLSPLCK DGHFQHPIST KACEALAQLP SSMPLYSGVH GEVVISTQPR WICNANALDS 120 DISNDTLGTR VLIPVVGGLI ELFVAKHIPK DQKTIEFITA QFNVSLDQDP KSVWNSANVK 180 LSEHHLALLP EEYSQHWPGI QALSSLTQFS SYPSVEGSSS GSNRSCGRPF DLNCGYIPPH 240 GSMNQSIGKS SGSKKPEYNV SSLKTKLALN CGNVVEKEKE KVIQEPKTKK FHSKNLATER 300 KRRHRITDGL FTLRALVPKI TKMDRAAIVG DAIEYIQELQ KEVKQLNNEL REMEEEDLEV 360 SQIGQRDFLI KIICEQKRGG FARFMEAIDS LGLQVADANV TTFCGKVLNI LKVEVRFK

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence Send to blast

MEETMRGLER TVEWLRPFVQ TKTWDYCVVW KLGDDPSRFI EWVGCCCSGG YGFVAKEERG  60
VEHHLSPLCK DGHFQHPIST KACEALAQLP SSMPLYSGVH GEVVISTQPR WICNANALDS  120
DISNDTLGTR VLIPVVGGLI ELFVAKHIPK DQKTIEFITA QFNVSLDQDP KSVWNSANVK  180
LSEHHLALLP EEYSQHWPGI QALSSLTQFS SYPSVEGSSS GSNRSCGRPF DLNCGYIPPH  240
GSMNQSIGKS SGSKKPEYNV SSLKTKLALN CGNVVEKEKE KVIQEPKTKK FHSKNLATER  300
KRRHRITDGL FTLRALVPKI TKMDRAAIVG DAIEYIQELQ KEVKQLNNEL REMEEEDLEV  360
SQIGQRDFLI KIICEQKRGG FARFMEAIDS LGLQVADANV TTFCGKVLNI LKVEVRFK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023919554.1	0.0	transcription factor bHLH90
TrEMBL	A0A2N9IQT0	0.0	A0A2N9IQT0_FAGSY; Uncharacterized protein
STRING	cassava4.1_031741m	1e-132	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12265	30	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10610.1	3e-49	bHLH family protein