PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold00454-snap-gene-0.46-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

Protein Properties

Length: 175aa MW: 19276.9 Da PI: 6.7871

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold00454-snap-gene-0.46-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	62.1	9.1e-20	53	142	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHH CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeF 68 f+k l++s+v + ++ lp kf+++h + +++ +tlede g+++ +k+i k++ l++GW++F maker-scaffold00454-snap-gene-0.46-mRNA-1 53 FVKSLVRSHVASCFWMGLPGKFCKAHLPD--KDTAITLEDEGGKQYVLKYIAYKTG----LSAGWRQF 114 89**********************534..5668***********666665....9*** PP HHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 69 vkangLkegDfvvFkldgrsefelvvkvfr 98 a++L egD++vF+l++ ++f +v ++r maker-scaffold00454-snap-gene-0.46-mRNA-1 115 SAAHNLLEGDVLVFQLVEPTKF--KVYIIR 142 *************9876666..888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.3E-22	45	144	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.53E-25	46	144	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.30E-29	51	142	No hit	No description
PROSITE profile	PS50863	13.719	53	144	IPR003340	B3 DNA binding domain
SMART	SM01019	4.0E-23	53	144	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.2E-17	53	142	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MPGQDVLSVN HVEMTASSRI GKHTFDGRGG ALSSALIRAE EVQSNLQHEY PSFVKSLVRS 60 HVASCFWMGL PGKFCKAHLP DKDTAITLED EGGKQYVLKY IAYKTGLSAG WRQFSAAHNL 120 LEGDVLVFQL VEPTKFKVYI IRPNDFTEVD GALGLLNLDA QTKQNDAGKC TDVYV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023923472.1	1e-111	B3 domain-containing protein Os01g0234100-like isoform X1
Swissprot	Q5KQI4	8e-41	Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBL	A0A2N9H913	1e-89	A0A2N9H913_FAGSY; Uncharacterized protein
STRING	XP_010094372.1	2e-79	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1007	33	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-38	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349]