PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00331-snap-gene-0.26-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 279aa    MW: 31400.1 Da    PI: 4.6533
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00331-snap-gene-0.26-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81e-171461148
                                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                               +g+WT++Ed++l+ +++++G g+W++ ++  g+ R++k+c++rw +yl
  maker-scaffold00331-snap-gene-0.26-mRNA-1 14 KGPWTPQEDQILISYIQKYGHGNWRALPKQAGLLRCGKSCRLRWTNYL 61
                                               79******************************99************97 PP
2Myb_DNA-binding50.83.9e-1667112148
                                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                                rg+++ eE+e +++++++lG++ W++Ia++++ gRt++++k+ w+++l
  maker-scaffold00331-snap-gene-0.26-mRNA-1  67 RGNFSIEEEETIIKLHEMLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 112
                                                89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-26564IPR009057Homeodomain-like
PROSITE profilePS5129417.581961IPR017930Myb domain
SuperFamilySSF466891.76E-3110108IPR009057Homeodomain-like
SMARTSM007176.5E-151363IPR001005SANT/Myb domain
PfamPF002491.3E-161461IPR001005SANT/Myb domain
CDDcd001673.62E-121661No hitNo description
PROSITE profilePS5129425.33662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.7E-2665117IPR009057Homeodomain-like
SMARTSM007172.6E-1366114IPR001005SANT/Myb domain
PfamPF002495.6E-1567112IPR001005SANT/Myb domain
CDDcd001672.93E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MVRAPCCEKM GLKKGPWTPQ EDQILISYIQ KYGHGNWRAL PKQAGLLRCG KSCRLRWTNY  60
LRPDIKRGNF SIEEEETIIK LHEMLGNRWS AIAARLPGRT DNEIKNVWHT HLKKRLKQNQ  120
AYPETKLQPT NCDSNAPVQS ESSSLTAPSQ QGFESPAYTT MSPQTSSSDD ISSATDASMA  180
TMDQNNMTNN IKGEHIDIWE TFPTIDEEFW SDAPLAENIS MPSSLLPNND ELLQAQFPFN  240
STELVEPDYS DGSNIIGDGM DFWYNLFIGA GGSPELSEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27121165108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117LKKRLKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00375DAPTransfer from AT3G23250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023879142.10.0transcription factor MYB14-like
TrEMBLA0A2N9GML51e-141A0A2N9GML5_FAGSY; Uncharacterized protein
STRINGEOY060401e-120(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.12e-77myb domain protein 15