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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold00328-augustus-gene-1.9-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | MYB | ||||||||
Protein Properties | Length: 256aa MW: 29523.1 Da PI: 6.5095 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.3 | 1.3e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l+ +v+++G +W+ ++ g+ R++k+c++rw +yl maker-scaffold00328-augustus-gene-1.9-mRNA-1 14 KGTWTPEEDRKLIAYVTKYGCWNWRQLPKFAGLSRCGKSCRLRWMNYL 61 799*****************99************************97 PP | |||||||
2 | Myb_DNA-binding | 56.5 | 6.5e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ ++eE+e ++++++ lG++ W+tIa+ ++ gRt++++k++w++ maker-scaffold00328-augustus-gene-1.9-mRNA-1 67 RGNYSKEEEETIIKLHESLGNR-WSTIASQLP-GRTDNEIKNHWHTN 111 899*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.976 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.62E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.8E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.80E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.922 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 8.4E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.4E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.3E-26 | 69 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.26E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MVRTPCCDKS GMKKGTWTPE EDRKLIAYVT KYGCWNWRQL PKFAGLSRCG KSCRLRWMNY 60 LRPNIKRGNY SKEEEETIIK LHESLGNRWS TIASQLPGRT DNEIKNHWHT NLKKRLKQNS 120 IAQEENSSSN NVFPREKSQK RLKGANNSHL HQETVEIIDS SMLSPQQSSS EFSSITTDTA 180 VAIITNMVVD DNVTSLEAYA ETNDNFWTEP FLADNSYIPS DFQAPLLDTE VLSPLFDEFF 240 CPYGLYKEHE GFDLCF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-28 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 111 | 117 | LKKRLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB434550 | 9e-40 | AB434550.1 Fagus crenata FcMYBS5 mRNA for transcription factor MYBS5, partial cds. | |||
GenBank | AB434577 | 9e-40 | AB434577.1 Fagus crenata FcMYBF3 mRNA for transcription factor MYBF3, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023889531.1 | 0.0 | transcription factor MYB14-like | ||||
Swissprot | Q9SJX8 | 4e-63 | MYB14_ARATH; Transcription factor MYB14 | ||||
TrEMBL | A0A2N9J0C4 | 1e-148 | A0A2N9J0C4_FAGSY; Uncharacterized protein | ||||
STRING | POPTR_0013s14560.1 | 1e-104 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF356 | 33 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 5e-63 | myb domain protein 14 |
Publications ? help Back to Top | |||
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