PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold00292-augustus-gene-0.22-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

G2-like

Protein Properties

Length: 276aa MW: 31163.5 Da PI: 7.3549

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold00292-augustus-gene-0.22-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	36.9	8.1e-12	20	43	2	25
G2-like 2 prlrWtpeLHerFveaveqLGGse 25 prlrWtpeLH++Fv+a+e+LGG++ maker-scaffold00292-augustus-gene-0.22-mRNA-1 20 PRLRWTPELHHCFVHAIERLGGHH 43 8*********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.3E-10	16	43	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MSSSCGRNGA VRQYIRSKVP RLRWTPELHH CFVHAIERLG GHHTDRGSTH QQRKQSFEEH 60 DDDDECVDEV NDVGFHPLSK LPIGKESDSP FTYCTPPPRK RARIETMSSI SESLQCSQRI 120 NETVANPYSF DDYMRAMAEH KGIKEGWGSR WQTQPQSPAF FLPQDLYNLN SVKYAVQESH 180 FLKVSSLEDQ KHTPERRPKH ENNGRGRAQE QEVGGCELSL SLSLPHPSSQ KSNASSMSEI 240 SEAISSYSRS YYKDCSSSSS GKRSINLDLS IALCGN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023898968.1	1e-171	myb family transcription factor PHL12-like
Refseq	XP_023898969.1	1e-171	myb family transcription factor PHL12-like
Refseq	XP_023898970.1	1e-171	myb family transcription factor PHL12-like
TrEMBL	A0A2N9H309	1e-146	A0A2N9H309_FAGSY; Uncharacterized protein
STRING	VIT_01s0137g00050.t01	1e-112	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5539	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	1e-13	G2-like family protein