PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold00287-snap-gene-1.31-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | DBB | ||||||||
Protein Properties | Length: 209aa MW: 23291.6 Da PI: 8.0675 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.9 | 7.3e-07 | 4 | 33 | 5 | 34 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e + fC ++ lC++C ++ H maker-scaffold00287-snap-gene-1.31-mRNA-1 4 LCDACEGAAAVVFCAADEAALCRSCDEKVH 33 7******99******************998 PP | |||||||
2 | zf-B_box | 28.5 | 3.1e-09 | 52 | 91 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 + ++C+ +e+ ++ ++Ce +++ lC +C + H g H maker-scaffold00287-snap-gene-1.31-mRNA-1 52 DVPRCDICENAPAFFYCEVDGSSLCLQCDMIVHVGgkrtH 91 5799**************************9995544455 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.267 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.1E-8 | 1 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.6E-5 | 3 | 41 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.16E-6 | 3 | 45 | No hit | No description |
SuperFamily | SSF57845 | 6.87E-5 | 48 | 86 | No hit | No description |
SMART | SM00336 | 8.4E-10 | 51 | 96 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.973 | 51 | 96 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.5E-7 | 52 | 85 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.59E-7 | 54 | 84 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0070370 | Biological Process | cellular heat acclimation | ||||
GO:0071483 | Biological Process | cellular response to blue light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MRTLCDACEG AAAVVFCAAD EAALCRSCDE KVHMCNKLAS RHVRVGLANP SDVPRCDICE 60 NAPAFFYCEV DGSSLCLQCD MIVHVGGKRT HGRYLLLRQR VEFPGDKPGH IEEPASQPVD 120 QGETRRVQNQ PPILTVVENQ QNHRVSPVPA SDANADGHAK KDTKMIDLNI NPQRMHEHGS 180 NNQSLRKKKS WKEQNSLDLK KNVKLRMIV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023922129.1 | 1e-130 | B-box zinc finger protein 18-like | ||||
Swissprot | C0SVM5 | 5e-80 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | A0A314Z8H5 | 1e-112 | A0A314Z8H5_PRUYE; B-box zinc finger protein 19-like | ||||
STRING | XP_008241795.1 | 1e-112 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2734 | 33 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38960.1 | 1e-68 | DBB family protein |