PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00281-augustus-gene-1.10-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family SBP
Protein Properties Length: 438aa    MW: 48111 Da    PI: 8.2505
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00281-augustus-gene-1.10-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP71.91.1e-2294145253
                                                    -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETT CS
                                            SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhels 53 
                                                    C v+gC++dls +++yhrrhkvCe hsk+p+v++ g++qrfCqqCsr+++++
  maker-scaffold00281-augustus-gene-1.10-mRNA-1  94 CLVDGCTSDLSICRDYHRRHKVCELHSKTPQVTICGQKQRFCQQCSRYYMID 145
                                                    ************************************************9875 PP
2SBP46.97.5e-151601894978
                                                    EEETTT--SS--S-STTTT-------S--- CS
                                            SBP  49 fhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                                    fh+l+efDe+krsCr+rL++hn+rrrk+q+
  maker-scaffold00281-augustus-gene-1.10-mRNA-1 160 FHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 189
                                                    9**************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.9E-2787174IPR004333Transcription factor, SBP-box
PROSITE profilePS5114126.33391187IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.49E-2192145IPR004333Transcription factor, SBP-box
PfamPF031108.5E-1694143IPR004333Transcription factor, SBP-box
PfamPF031108.9E-8160186IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.22E-11160192IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MDWNLKAPPS WDLSELEQGA FPNIETVSGS SSFGDHRAQR GDFSVDLKLG QVGSSGNESV  60
NKWKEPGVSK MASPSSGSSK RARAANNGTQ PVSCLVDGCT SDLSICRDYH RRHKVCELHS  120
KTPQVTICGQ KQRFCQQCSR YYMIDGVSAF LVKVTSAMLF HSLEEFDEGK RSCRKRLDGH  180
NRRRRKPQPE PLSRPGNYLS NYQGLKFFML NIHSAECFNA CYDCCLVFVV SGPQFIQFSG  240
THVYPSTTVM SPAWAGVLNT AADARLPNQQ QQLQLLDKQK LYLGSSPSTS SYIGGGKQIS  300
FLQNSSTPLN NQLSLEAPVC QPLLRTIASE SDGARRKMYC DRLTARVHDS DCALSLLSSP  360
QSQSSGHNLS HVMHPNSASL VQPLGPSLHG DRTLEPMDSV LVSNGSGNNV HCQGMFLMGS  420
DGSQGNQTPQ NLPFHNWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-23941861184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169186KRSCRKRLDGHNRRRRKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023894488.10.0squamosa promoter-binding-like protein 13A
RefseqXP_023894489.10.0squamosa promoter-binding-like protein 13A
RefseqXP_023894490.10.0squamosa promoter-binding-like protein 13A
TrEMBLA0A2N9EB570.0A0A2N9EB57_FAGSY; Uncharacterized protein
STRINGXP_008239496.11e-164(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25913378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.14e-67SBP family protein