PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00269-snap-gene-0.33-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family WRKY
Protein Properties Length: 543aa    MW: 60448.1 Da    PI: 5.0466
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00269-snap-gene-0.33-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY63.34e-20256298142
                                                ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-S CS
                                       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversa 42 
                                                ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v++  
  maker-scaffold00269-snap-gene-0.33-mRNA-1 256 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVKQFP 298
                                                58***************************99********9866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.9E-26241336IPR003657WRKY domain
SuperFamilySSF1182905.62E-19249305IPR003657WRKY domain
PROSITE profilePS5081122.653251336IPR003657WRKY domain
SMARTSM007744.6E-30256335IPR003657WRKY domain
PfamPF031062.5E-23257334IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MGREKEGDME IDLSLNIDAK EEEEEEEKEE VDEEEEEDEE KEQKNDQEHV HDAEEAAEAT  60
AGEVDDDDDA SVVEVSLQQS MKTEELCVLK MEMNRMKEEN KALRKVVEQT MKEYDDLQMK  120
FAAIQQDNQR KDPQIFLSLH GNYDNTTQEQ KAVPKILDIS NQSSLVSHKN GIGIRESELG  180
LSLRLHNTDA HEDHERVEIE DKEEENKKLE LASFAPSVQN KQQRPGDLGG FTGHVVSPAN  240
RKARVSVRAR CETATMNDGC QWRKYGQKIA KGNPCPRAYY RCTVAPGCPV RKQVKQFPKL  300
NLMNIVVVLQ FEVQRCLEDM SILITTYEGN HNHPLPVGAT AMASTASPSA SFMLVDSSSP  360
SDGTSCVTQG TLPYHMMNPS AHHPSNIRSM INPNDPSKGN IVLDLTNNPF EQAYHQLIPM  420
ASHSSQPHHQ QGFNWMHGKP SYHHNNVGNS LTNNKLFASP SDKGWKGEED KKSLAENVTA  480
IASDPKFRVA VAAAISSLIN KENHNSTTHP VGTSFGPRDI GESSSSASNN WVLESLSGKG  540
KPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-18243338176WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0968482e-54BT096848.1 Soybean clone JCVI-FLGm-15D10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023920248.10.0probable WRKY transcription factor 9 isoform X1
TrEMBLA0A2N9FLF70.0A0A2N9FLF7_FAGSY; Uncharacterized protein
STRINGEOX974001e-161(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93203141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.13e-63WRKY DNA-binding protein 9