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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
maker-scaffold00261-snap-gene-0.32-mRNA-1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family |
HD-ZIP |
Protein Properties |
Length: 328aa MW: 36554.6 Da PI: 8.4965 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
maker-scaffold00261-snap-gene-0.32-mRNA-1 | genome | THGP | View Nucleic Acid |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 47.3 | 3.6e-15 | 158 | 217 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--H.....HHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsa.....eereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++keq Lee F+++++++ +++ LAk+l+L+ rqV vWFqNrRa+ k
maker-scaffold00261-snap-gene-0.32-mRNA-1 158 RKKLRLSKEQSLLLEETFKEHNTLNPvsgifKQKLALAKQLNLSPRQVEVWFQNRRARTK 217
788899**************9999975566679999**********************98 PP
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2 | HD-ZIP_I/II | 117.8 | 6.2e-38 | 158 | 252 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLep.....erKvelareLglqprqvavWFqnrRARtktkqlEkdy 63
+kk+rlskeq+ lLEe+F+e+++L+p ++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+
maker-scaffold00261-snap-gene-0.32-mRNA-1 158 RKKLRLSKEQSLLLEETFKEHNTLNPvsgifKQKLALAKQLNLSPRQVEVWFQNRRARTKLKQTEVDC 225
69***********************97777789*********************************** PP
HD-ZIP_I/II 64 eaLkraydalkeenerLekeveeLreel 91
e+Lkr++++l++en+rL+kev+eLr +l
maker-scaffold00261-snap-gene-0.32-mRNA-1 226 EYLKRCCENLTDENRRLQKEVQELR-AL 252
************************9.55 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 328 aa
Download sequence Send
to blast |
MGEKGSSLEL GLGLSLSLGF GGNNSSSNNN NNKNNNNDSH HQPSSKMNLM HKPPPQLVQN 60 HNQKTPWNEM FQFPAERNQD TRSFLRGIDV NRLPASSTVD YNCEDENGVS SPNSTISSSI 120 SGKRSEREAN NGDENDAERA SCSRGSDDED GGGGDTSRKK LRLSKEQSLL LEETFKEHNT 180 LNPVSGIFKQ KLALAKQLNL SPRQVEVWFQ NRRARTKLKQ TEVDCEYLKR CCENLTDENR 240 RLQKEVQELR ALKLSPQLYM HMNPPTTLTM CPSCERVNVS SSSSSSMVAP TGPTRHPQGP 300 NVQRPIPINP WATLPIHHRP LDAPASRS
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 156 | 162 | SRKKLRL |
2 | 211 | 219 | RRARTKLKQ |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |