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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold00245-snap-gene-0.26-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 283aa MW: 32351.8 Da PI: 7.9654 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.1 | 6.3e-18 | 78 | 131 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k maker-scaffold00245-snap-gene-0.26-mRNA-1 78 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 131 456899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 129.2 | 1.7e-41 | 77 | 167 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkr 68 ekkrrl+ eqvk+LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lkr maker-scaffold00245-snap-gene-0.26-mRNA-1 77 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKR 144 69****************************************************************** PP HD-ZIP_I/II 69 aydalkeenerLekeveeLreel 91 +++a+k++n++L++++++L++e+ maker-scaffold00245-snap-gene-0.26-mRNA-1 145 QFEAVKADNDALQAQNQKLQAEI 167 ********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-19 | 52 | 134 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.58E-19 | 67 | 135 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.119 | 73 | 133 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-17 | 76 | 137 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.8E-15 | 78 | 131 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.21E-15 | 78 | 134 | No hit | No description |
PRINTS | PR00031 | 1.1E-5 | 104 | 113 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 108 | 131 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.1E-5 | 113 | 129 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.3E-15 | 133 | 173 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009744 | Biological Process | response to sucrose | ||||
GO:0048826 | Biological Process | cotyledon morphogenesis | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MGWPSSQQIS CFNLLMKMII NIPLLSIQSY PHAHLKTFMA RVASFLGKRS MSFSGVELGD 60 DGNGEDDLSD DGSQVGEKKR RLNMEQVKTL EKNFELGNKL EPERKMQLAR ALGLQPRQIA 120 IWFQNRRARW KTKQLEKDYD LLKRQFEAVK ADNDALQAQN QKLQAEILAL KNREPTESIN 180 LNKETEGSCS NRSENSSEIK LDISRTPAID SPLSTHPTSR PLFPTSMIRP PGSVAQLFQT 240 TSRPELQCQK MDQMVKEESL STMFCGMDDQ SAFWPWLEQQ HFN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 125 | 133 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00225 | DAP | Transfer from AT1G69780 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023920525.1 | 1e-174 | homeobox-leucine zipper protein ATHB-13-like | ||||
Refseq | XP_023920526.1 | 1e-174 | homeobox-leucine zipper protein ATHB-13-like | ||||
Refseq | XP_023920527.1 | 1e-174 | homeobox-leucine zipper protein ATHB-13-like | ||||
Swissprot | Q8LC03 | 1e-104 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | A0A2N9J3C4 | 1e-165 | A0A2N9J3C4_FAGSY; Uncharacterized protein | ||||
STRING | XP_008221655.1 | 1e-151 | (Prunus mume) | ||||
STRING | EMJ26969 | 1e-151 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1271 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 3e-96 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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