PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00229-snap-gene-0.48-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C3H
Protein Properties Length: 450aa    MW: 49196.2 Da    PI: 7.7849
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00229-snap-gene-0.48-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.34.6e-07127147526
                                                --SGGGGTS--TTTTT-SS-SS CS
                                    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                                 C+f+ + G C yG++C++ H+
  maker-scaffold00229-snap-gene-0.48-mRNA-1 127 VCNFWIQ-GNCGYGEKCRYLHS 147
                                                7******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.183358IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.4323359IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-5122148IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-7122147IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.976122149IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-7125147IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.103.5E-15148257IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509784.58E-47150201IPR017986WD40-repeat-containing domain
SMARTSM003201.3E-5153192IPR001680WD40 repeat
PfamPF004004.3E-4158192IPR001680WD40 repeat
PROSITE profilePS5008214.184160201IPR001680WD40 repeat
PROSITE profilePS5029420.461160362IPR017986WD40-repeat-containing domain
PRINTSPR003209.1E-6179193IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780179193IPR019775WD40 repeat, conserved site
SMARTSM003209.7232269IPR001680WD40 repeat
SuperFamilySSF509784.58E-47239441IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.103.4E-33258441IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003209.0E-5276313IPR001680WD40 repeat
PfamPF004000.008280313IPR001680WD40 repeat
PROSITE profilePS5008211.712283322IPR001680WD40 repeat
PRINTSPR003209.1E-6300314IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780300314IPR019775WD40 repeat, conserved site
SMARTSM003202.6E-4316353IPR001680WD40 repeat
PfamPF004000.0012318352IPR001680WD40 repeat
PRINTSPR003209.1E-6340354IPR020472G-protein beta WD-40 repeat
SMARTSM0032023357400IPR001680WD40 repeat
SMARTSM003206.3403440IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MDVDSGSKRV FQRLGGPVEN SKNHHHNNNN NNNQIQKVCY HWRAGNCNRH PCPYLHRELP  60
PPPNGSSKRG GGGGFSDDYS SSSSSFSGPR SSRPNYNNTW GRAHGGGGGG NRTLTRNNKP  120
TEKVPKVCNF WIQGNCGYGE KCRYLHSWST GDNFSMVAQL EGHQKVVSGI ALPSESNSLY  180
TGSKDETVRL WDCTTGQCNA VIQLGGEVGC MINEGHWVFV GIPNAVKAWN TLNNSELSLS  240
GPVGQVYAMV VGNDLLFAGT QDGSILAWKF NVVTNTFEPA ASLKGHTLGV VSLVVGANRL  300
YSGSMDCSIR VWNLETLQCV QTLKEHSSVV MSVLCWDQFL LSCSLDKTIK VWVATESGNL  360
EVTYTHNEDH GLLTLCGMHD LESKPILLCS CNDNTVHLYD LPSFSERGKI YAKQEVRAIQ  420
MGPGGLFFTG DGAGQVKVWR WLAESTATTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A2e-2116043910323Tako8
6g6n_A2e-2116043910323Tako8
6g6n_B2e-2116043910323Tako8
6g6n_C2e-2116043910323Tako8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023898569.10.0zinc finger CCCH domain-containing protein 48-like
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A2N9FJH90.0A0A2N9FJH9_FAGSY; Uncharacterized protein
STRINGXP_009371273.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74463343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1