PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00228-snap-gene-0.34-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family AP2
Protein Properties Length: 361aa    MW: 40503.8 Da    PI: 7.978
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00228-snap-gene-0.34-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.98.9e-17157206155
                                        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                                s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  maker-scaffold00228-snap-gene-0.34-mRNA-1 157 SQYRGVTFYRRTGRWESHIWD------SgKQVYLGGFDTAHTAARAYDRAAIKFRG 206
                                                78*******************......44************************997 PP
2AP239.41.5e-12249299155
                                        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                                s+y+GV+ +k  grW+A+   +     +k+ +lg f+++ eAa+a++ a+ k +g
  maker-scaffold00228-snap-gene-0.34-mRNA-1 249 SKYRGVTLHK-CGRWEARMGQF--L-GKKYKYLGLFDSEAEAARAYDMAAIKCNG 299
                                                89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.35E-16157216IPR016177DNA-binding domain
PfamPF008478.1E-10157206IPR001471AP2/ERF domain
PROSITE profilePS5103217.952158214IPR001471AP2/ERF domain
CDDcd000184.41E-23158216No hitNo description
SMARTSM003807.9E-31158220IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-17158214IPR001471AP2/ERF domain
CDDcd000186.43E-24249309No hitNo description
SuperFamilySSF541711.11E-16249308IPR016177DNA-binding domain
PfamPF008477.3E-9249299IPR001471AP2/ERF domain
PROSITE profilePS5103215.659250307IPR001471AP2/ERF domain
SMARTSM003802.0E-30250313IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-15250307IPR001471AP2/ERF domain
PRINTSPR003673.9E-6251262IPR001471AP2/ERF domain
PRINTSPR003673.9E-6289309IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MLDLNVDILS NNSVCDEKDT VMELVKLPED SGTSTSSIIN AEEAPTNARD EDSSNNSSSE  60
FMFDILKSKE RYSVHNTNEV QQKTPSSELV TRTLFPVTGE RESGESEFIL GSSSSSLSLT  120
KTQWLNLSGS GQPELRIMQQ KQQQARKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDSGK  180
QVYLGGFDTA HTAARAYDRA AIKFRGIDAD INFSVSDYED DMKQTRNMTK EEFIHILRRQ  240
STGFARGSSK YRGVTLHKCG RWEARMGQFL GKKYKYLGLF DSEAEAARAY DMAAIKCNGR  300
EAVTNFEPST YEGEIIVDGN TQGNGHNLDL SLGISNGSKG KDNAGDRLSR CNRERLMGNH  360
T
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023905806.10.0ethylene-responsive transcription factor RAP2-7-like
SwissprotB8AMA91e-101AP22_ORYSI; APETALA2-like protein 2
TrEMBLA0A2N9EEU61e-179A0A2N9EEU6_FAGSY; Uncharacterized protein
STRINGPOPTR_0008s04490.11e-140(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.36e-85related to AP2.7