PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00223-snap-gene-0.22-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 309aa    MW: 35453.1 Da    PI: 8.7664
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00223-snap-gene-0.22-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.9e-161360148
                                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                               rg+W+++Ed +l++++k +G g W+  +++ g++R++k+c++rw++yl
  maker-scaffold00223-snap-gene-0.22-mRNA-1 13 RGAWSAWEDNILKNYIKIHGEGKWTDLPQRAGLRRCGKSCRLRWLNYL 60
                                               89********************************************97 PP
2Myb_DNA-binding53.74.9e-1766127147
                                                TSSS-HHHHHHHHHHHHHTTTT................-HHHHHHHHTTTS-HHHHHHHHHHH CS
                            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg................tWktIartmgkgRtlkqcksrwqky 47 
                                                rg+++++E++l+++++k+lG++                +W++Iar+++ gRt++++k++w++ 
  maker-scaffold00223-snap-gene-0.22-mRNA-1  66 RGNFSEDEEDLIIKLHKLLGNRygkssssstqptqynlSWSLIARRLP-GRTDNEIKNYWNTI 127
                                                89**********************************************.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.322864IPR017930Myb domain
SuperFamilySSF466892.6E-2211124IPR009057Homeodomain-like
SMARTSM007176.4E-121262IPR001005SANT/Myb domain
PfamPF002491.1E-141360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-211467IPR009057Homeodomain-like
CDDcd001672.97E-91560No hitNo description
PROSITE profilePS5129414.12965132IPR017930Myb domain
SMARTSM007177.2E-1565130IPR001005SANT/Myb domain
PfamPF002497.2E-1566127IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2268132IPR009057Homeodomain-like
CDDcd001674.88E-1068128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MGRRPCFPKG VIRGAWSAWE DNILKNYIKI HGEGKWTDLP QRAGLRRCGK SCRLRWLNYL  60
RPDIKRGNFS EDEEDLIIKL HKLLGNRYGK SSSSSTQPTQ YNLSWSLIAR RLPGRTDNEI  120
KNYWNTILSK RVQDGKIHEQ GSRIGKTIGH SYPGIKSVAH PVIRPKAVRC TKVILPWQPN  180
NNQMVNENIV PFGDSKNSFP SVQQENNIPD FLTSLDTNDL LRSDMQNSDG HQTNEINLCD  240
IVLDGEGHLR NMSFYPKDLP VFGCDAKLKD LMDEGKLENW RGTNPIQPNE AMDMNRLAYF  300
LDSEDEWVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-20111325108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4345872e-31AB434587.1 Fagus crenata FcMYBGAP2 mRNA for transcription factor MYBGAP2, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023911881.11e-161transcription factor MYB4-like
SwissprotP102901e-51MYBC_MAIZE; Anthocyanin regulatory C1 protein
TrEMBLA0A2N9HNK71e-130A0A2N9HNK7_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.13e-53MYB family protein
Publications ? help Back to Top
  1. Chen B,Wang X,Hu Y,Wang Y,Lin Z
    Ectopic expression of a c1-I allele from maize inhibits pigment formation in the flower of transgenic tobacco.
    Mol. Biotechnol., 2004. 26(3): p. 187-92
    [PMID:15004287]
  2. Paz-Ares J,Ghosal D,Saedler H
    Molecular analysis of the C1-I allele from Zea mays: a dominant mutant of the regulatory C1 locus.
    EMBO J., 1990. 9(2): p. 315-21
    [PMID:2303027]
  3. Cone KC,Burr FA,Burr B
    Molecular analysis of the maize anthocyanin regulatory locus C1.
    Proc. Natl. Acad. Sci. U.S.A., 1986. 83(24): p. 9631-5
    [PMID:3025847]
  4. Paz-Ares J,Ghosal D,Wienand U,Peterson PA,Saedler H
    The regulatory c1 locus of Zea mays encodes a protein with homology to myb proto-oncogene products and with structural similarities to transcriptional activators.
    EMBO J., 1987. 6(12): p. 3553-8
    [PMID:3428265]
  5. Scheffler B, et al.
    Molecular analysis of C1 alleles in Zea mays defines regions involved in the expression of this regulatory gene.
    Mol. Gen. Genet., 1994. 242(1): p. 40-8
    [PMID:7904044]
  6. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]
  7. Singer T,Gierl A,Peterson PA
    Three new dominant C1 suppressor alleles in Zea mays.
    Genet. Res., 1998. 71(2): p. 127-32
    [PMID:9717435]