PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

maker-scaffold00160-snap-gene-1.16-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

FAR1

Protein Properties

Length: 292aa MW: 34232.1 Da PI: 9.5292

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold00160-snap-gene-1.16-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	23.6	1.7e-07	82	138	2	60
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrt 60 Y++YA++ GF++rk + ++ nge ++r f +eg+++ ++ +++ke+r+r +tr maker-scaffold00160-snap-gene-1.16-mRNA-1 82 LYKNYANRYGFTIRKCHFVTK--NGENVRRVFFYHREGRQQLKRVDSSKEQRNRISTRL 138 5************998777..89999************999999999999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.1E-5	82	137	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MNDIVITSEI YQSVSRNCVD LNELPNDGEN NDICGEEIVV WNEYPMEEIG VIEENEDINS 60 IENEFEPFFG QCFLREEEAF ILYKNYANRY GFTIRKCHFV TKNGENVRRV FFYHREGRQQ 120 LKRVDSSKEQ RNRISTRLRF LPANRVITKE DKDRILLLKK GGLLVRKIIR VMELKKGVKH 180 GDLPFFKRDI HNLYTFANLM KKSLKTILTD QNPWITEAIS KELPYTKHDF SIWHITAKFS 240 GWLTAILRSQ YSNCLSHTYS DKASGTGPKK KNAMTQARAI TYTNRNCGLK RN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024630748.1	1e-59	protein FAR1-RELATED SEQUENCE 11-like
TrEMBL	A0A2U1PBC9	2e-54	A0A2U1PBC9_ARTAN; FAR1 DNA-binding domain protein
STRING	XP_010689388.1	2e-37	(Beta vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15165	4	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	8e-19	FAR1-related sequence 11