PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00149-snap-gene-0.42-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 265aa    MW: 30151 Da    PI: 7.3911
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00149-snap-gene-0.42-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.87e-151475148
                                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..............TTS-HHHHHHHHHHHT CS
                            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..............kgRtlkqcksrwqkyl 48
                                               +g+WT++Ed++l d+v+ +G + W+ +a++ g              + R++k+c++rw++yl
  maker-scaffold00149-snap-gene-0.42-mRNA-1 14 KGAWTAQEDKILTDYVAIHGERKWSNVAKKAGmrkthhdtempswgLQRCGKSCRLRWLNYL 75
                                               79**********************************************************97 PP
2Myb_DNA-binding49.97.1e-1681125147
                                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                                rg+ ++ E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++
  maker-scaffold00149-snap-gene-0.42-mRNA-1  81 RGNISPAEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTV 125
                                                7899******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.205975IPR017930Myb domain
SuperFamilySSF466892.81E-2612122IPR009057Homeodomain-like
SMARTSM007172.4E-121377IPR001005SANT/Myb domain
PfamPF002497.7E-141475IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-231582IPR009057Homeodomain-like
CDDcd001673.38E-91675No hitNo description
PROSITE profilePS5129425.40376130IPR017930Myb domain
SMARTSM007178.9E-1680128IPR001005SANT/Myb domain
PfamPF002493.4E-1481125IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2583131IPR009057Homeodomain-like
CDDcd001671.04E-1085126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MGRLPCCSKE EMNKGAWTAQ EDKILTDYVA IHGERKWSNV AKKAGMRKTH HDTEMPSWGL  60
QRCGKSCRLR WLNYLRPDIK RGNISPAEED LIIRLHKLLG NRWSLIAGRL PGRTDNEIKN  120
YWNTVMKKKM IDGKQRKQKT IVPSDDEITN SNTSVSNVVK TKETSGSNAL EEPFKDRCLV  180
SDNVANESKS NDEFKSIFSE DDYSPNFLSS FNYMDELLMA DVSGSDFWKL CMSHDNVEGG  240
CTNNGAINDL YSSLDKPLPL FNDVQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-271113024128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4346494e-48AB434649.1 Fagus crenata FcMYB303A1, FcMYB303A2 genes for transcription factor MYB303A1, transcription factor MYB303A2, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023916600.11e-172transcription factor WER-like
TrEMBLA0A2N9F1U61e-121A0A2N9F1U6_FAGSY; Uncharacterized protein
STRINGXP_010047392.12e-71(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.14e-57myb domain protein 3