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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
maker-scaffold00096-augustus-gene-0.29-mRNA-1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family |
MYB |
Protein Properties |
Length: 428aa MW: 47324.6 Da PI: 5.7659 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
maker-scaffold00096-augustus-gene-0.29-mRNA-1 | genome | THGP | View Nucleic Acid |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 48 | 3e-15 | 50 | 97 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+grWT +Ede+l ++++ G g+W+t ++ g+ R++k+c++rw +yl
maker-scaffold00096-augustus-gene-0.29-mRNA-1 50 KGRWTVQEDEILTNYIQANGEGSWRTLPKNAGLLRCGKSCRLRWINYL 97
79******************************99************97 PP
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2 | Myb_DNA-binding | 52.4 | 1.2e-16 | 103 | 148 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+ T+eE+e +v+++ lG++ W++Ia ++ gRt++++k++w+++l
maker-scaffold00096-augustus-gene-0.29-mRNA-1 103 RGNITPEEEETIVKLHSVLGNR-WSLIAGSLP-GRTDNEIKNYWNSHL 148
7999******************.*********.************986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 428 aa
Download sequence Send
to blast |
MSISPTSLSS SLPINFTDNN PAESSLSFSF APESTEMGRA PCCEKVGLKK GRWTVQEDEI 60 LTNYIQANGE GSWRTLPKNA GLLRCGKSCR LRWINYLRAD LKRGNITPEE EETIVKLHSV 120 LGNRWSLIAG SLPGRTDNEI KNYWNSHLSR KLYSFTKSTN ESLSTVINMA ATRKGRDGRG 180 RIRRLTTKKH KNTASNIVGM SPLQSGTTAT DDEVLDPRAQ EKARVPGFTF ARQAEKNPMM 240 GLFGSGAPEQ QGEVKRGPGV HGSCMDTTVI KLGQAGPNKE GLKSEAVLCP SQKRESEGLG 300 PYEWFDGEIM HPGYVLESGV QNTGETVAHK KQRENGVLGI NSEEERVNNR ALKTEKETTS 360 EEKESSVISS NVADGEWNTC SSSINSSFDY EWLDWDWVGG AECHNQYELW DEGENMTVCL 420 WGTGNGED
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1a5j_A | 3e-22 | 48 | 152 | 5 | 108 | B-MYB |