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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold00088-augustus-gene-1.42-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | C3H | ||||||||
Protein Properties | Length: 359aa MW: 39439.8 Da PI: 9.0137 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 39.5 | 9.3e-13 | 220 | 246 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG CkyG+ C+F+H++ maker-scaffold00088-augustus-gene-1.42-mRNA-1 220 PGQPECQFYMKTGDCKYGAVCRFHHPR 246 5789*********************96 PP | |||||||
2 | zf-CCCH | 40.5 | 4.6e-13 | 266 | 292 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ maker-scaffold00088-augustus-gene-1.42-mRNA-1 266 PGEPLCIFYSRYGICKFGPSCKFDHPM 292 589**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 4.1E-6 | 219 | 246 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.596 | 219 | 247 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.2E-9 | 221 | 246 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.58E-6 | 223 | 249 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-5 | 225 | 247 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.6E-7 | 265 | 292 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.709 | 265 | 293 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-10 | 267 | 292 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-5 | 268 | 292 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.6E-4 | 270 | 290 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MMVSLNGSTV YPTVQSPTTP GQQSYAGGIT NWSRASFIPS PRWQGPSSYA PLLLHQGMVS 60 VPGWNAYGAL LGNLRVSFRK RKEGEGRQGR LYIDAGTTLM DKKAWVELKS FFVSRLSLHL 120 KPSESWLWMM SNAVVDWLPV VRRCWWWYLG ALIVEVGQLG SVSSSETQQQ TVANSQIYGT 180 SRQGESTSAG SQGTFSPFRS GSVPVGFYAL QRENVFPERP GQPECQFYMK TGDCKYGAVC 240 RFHHPRERLI PAPDCVLSPI GLPLRPGEPL CIFYSRYGIC KFGPSCKFDH PMGIFAYNIS 300 ASSSADAPVR RLLGSSSGTA ALNLSSEGLV DAGLAKPRRL SLSESRQMPS GDDNIDTEE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023900703.1 | 1e-140 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Refseq | XP_023900704.1 | 1e-140 | zinc finger CCCH domain-containing protein ZFN-like isoform X2 | ||||
Refseq | XP_023900705.1 | 1e-140 | zinc finger CCCH domain-containing protein ZFN-like isoform X2 | ||||
Swissprot | Q9SWF9 | 1e-110 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A1R3HRD5 | 1e-156 | A0A1R3HRD5_9ROSI; Zinc finger, CCCH-type | ||||
STRING | XP_008218439.1 | 1e-125 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5321 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16540.3 | 5e-62 | zinc finger nuclease 3 |