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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
maker-scaffold00040-snap-gene-2.15-mRNA-1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family |
MYB_related |
Protein Properties |
Length: 323aa MW: 36005.4 Da PI: 10.0821 |
Description |
MYB_related family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
maker-scaffold00040-snap-gene-2.15-mRNA-1 | genome | THGP | View Nucleic Acid |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 36.8 | 9.3e-12 | 26 | 76 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
+++WT+eE+ l+ +v ++G g W+tI + R+ ++k++w++
maker-scaffold00040-snap-gene-2.15-mRNA-1 26 KQKWTQEEEAALKAGVIKHGAGKWRTILKDPEfsgvlYLRSNVDLKDKWRN 76
79***********************************88***********9 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006334 | Biological Process | nucleosome assembly |
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter |
GO:0009651 | Biological Process | response to salt stress |
GO:0009723 | Biological Process | response to ethylene |
GO:0009733 | Biological Process | response to auxin |
GO:0009737 | Biological Process | response to abscisic acid |
GO:0009739 | Biological Process | response to gibberellin |
GO:0009751 | Biological Process | response to salicylic acid |
GO:0009753 | Biological Process | response to jasmonic acid |
GO:0046686 | Biological Process | response to cadmium ion |
GO:0000786 | Cellular Component | nucleosome |
GO:0005730 | Cellular Component | nucleolus |
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding |
GO:0033613 | Molecular Function | activating transcription factor binding |
GO:0042803 | Molecular Function | protein homodimerization activity |
GO:0070491 | Molecular Function | repressing transcription factor binding |
GO:1990841 | Molecular Function | promoter-specific chromatin binding |
Sequence ? help Back to Top |
Protein Sequence Length: 323 aa
Download sequence Send
to blast |
MSDVTPWHDQ ILLGRIFVLF WMGAPKQKWT QEEEAALKAG VIKHGAGKWR TILKDPEFSG 60 VLYLRSNVDL KDKWRNMSVM ANGWGSREKA RLAVKRVPHI SKQEENSMAL GNVVQSDEEM 120 MDTKPLSVSS ETAQVATPKR SIVRLDNLIF EAITNLKEPG GSNKTNIATY IEEQYWAPPD 180 FKRLLSAKLK YLTANGKLIK VKRRYRIAPT PAFSDRRRIS SMLAPEGRQR VFPKVEKDDA 240 HIFSKTQIDI DLAKMRTMTA QEAAVAAAEA VAEAEAAIAE AEEAAREAEL AEADAEAAQA 300 FAAAAVKTLK GRNNPKMVQM IRA
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Functional Description ? help
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Source |
Description |
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KF208677 | 3e-44 | KF208677.1 Arachis hypogaea putative MYB-related protein 23 (MYB23) gene, complete cds. |
Publications
? help Back to Top |
- Alexandrov NN, et al.
Features of Arabidopsis genes and genome discovered using full-length cDNAs. Plant Mol. Biol., 2006. 60(1): p. 69-85 [PMID:16463100] - Schrumpfová PP, et al.
Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase. Plant J., 2014. 77(5): p. 770-81 [PMID:24397874] - Liang SC, et al.
Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2. PLoS Genet., 2015. 11(12): p. e1005660 [PMID:26642436] - Fulcher N,Riha K
Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana. Front Genet, 2015. 6: p. 349 [PMID:26779251] - Kotliński M, et al.
Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]
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