PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00040-snap-gene-2.15-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB_related
Protein Properties Length: 323aa    MW: 36005.4 Da    PI: 10.0821
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00040-snap-gene-2.15-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.89.3e-122676146
                                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
                            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                                               +++WT+eE+  l+ +v ++G g W+tI +          R+  ++k++w++
  maker-scaffold00040-snap-gene-2.15-mRNA-1 26 KQKWTQEEEAALKAGVIKHGAGKWRTILKDPEfsgvlYLRSNVDLKDKWRN 76
                                               79***********************************88***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.8E-152391IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-132577IPR009057Homeodomain-like
SMARTSM007175.3E-72580IPR001005SANT/Myb domain
PfamPF002493.8E-82676IPR001005SANT/Myb domain
PROSITE profilePS500907.5842678IPR017877Myb-like domain
CDDcd116601.68E-172777No hitNo description
SuperFamilySSF467854.35E-18138218IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005261.6E-16139204IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.102.3E-15140210IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150425.111141209IPR005818Linker histone H1/H5, domain H15
PfamPF005381.3E-8146202IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MSDVTPWHDQ ILLGRIFVLF WMGAPKQKWT QEEEAALKAG VIKHGAGKWR TILKDPEFSG  60
VLYLRSNVDL KDKWRNMSVM ANGWGSREKA RLAVKRVPHI SKQEENSMAL GNVVQSDEEM  120
MDTKPLSVSS ETAQVATPKR SIVRLDNLIF EAITNLKEPG GSNKTNIATY IEEQYWAPPD  180
FKRLLSAKLK YLTANGKLIK VKRRYRIAPT PAFSDRRRIS SMLAPEGRQR VFPKVEKDDA  240
HIFSKTQIDI DLAKMRTMTA QEAAVAAAEA VAEAEAAIAE AEEAAREAEL AEADAEAAQA  300
FAAAAVKTLK GRNNPKMVQM IRA
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00607ChIP-seqTransfer from AT1G49950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2086773e-44KF208677.1 Arachis hypogaea putative MYB-related protein 23 (MYB23) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023923278.10.0telomere repeat-binding factor 1-like
RefseqXP_023923279.10.0telomere repeat-binding factor 1-like
SwissprotQ8VWK41e-107TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A2I4DFT01e-148A0A2I4DFT0_JUGRE; telomere repeat-binding factor 1-like isoform X2
STRINGXP_008236303.11e-137(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145333101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-105telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]