PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | maker-scaffold00007-snap-gene-2.57-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
||||||||
Family | DBB | ||||||||
Protein Properties | Length: 237aa MW: 26377.7 Da PI: 4.6459 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.7 | 2e-07 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ +e+ ++++ C ++ lC++C +e H H++ maker-scaffold00007-snap-gene-2.57-mRNA-1 4 QCDVCEKAPATIICCADEAALCAKCDVEVHAAnklaskHQR 44 7*****************************65667777765 PP | |||||||
2 | zf-B_box | 29.2 | 1.9e-09 | 53 | 94 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + ++C+ +++k + +fC +++ l+C+dC + +H+ H maker-scaffold00007-snap-gene-2.57-mRNA-1 53 KLPRCDICQDKAAFIFCVEDRALFCQDCDEPIHSAgslsanH 94 789******************************656666666 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.343 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.37E-6 | 3 | 47 | No hit | No description |
SMART | SM00336 | 8.2E-10 | 4 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.7E-5 | 4 | 44 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.7E-14 | 52 | 99 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.015 | 52 | 99 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.1E-8 | 53 | 95 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.27E-7 | 55 | 98 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0090351 | Biological Process | seedling development | ||||
GO:1902448 | Biological Process | positive regulation of shade avoidance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003712 | Molecular Function | transcription cofactor activity | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 237 aa Download sequence Send to blast |
MKIQCDVCEK APATIICCAD EAALCAKCDV EVHAANKLAS KHQRLLLQCH SNKLPRCDIC 60 QDKAAFIFCV EDRALFCQDC DEPIHSAGSL SANHQRFLAT GIRVALSSGC NKENEKSSLE 120 PPNENKQQVS LKTPTQQASS FSSQWALDEF LHFSDPESSD KKEPLELGEL EWIADMGLFA 180 DQFPQEALAA AEVPQLPMSQ PSNYTSYRPV KSNMPYKKPR IEFPEDDDEH FTVPDLG |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation (PubMed:17605755, PubMed:18540109, PubMed:21685177). BBX24/STO and BBX25/STH function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX24/STO acts additively with BBX25/STH during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). Functions as negative regulator of photomorphogenic UV-B responses by interacting with both COP1 and HY5 (PubMed:22410790). May act as a transcription factor in the salt-stress response (PubMed:12909688). {ECO:0000269|PubMed:12909688, ECO:0000269|PubMed:17605755, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:21685177, ECO:0000269|PubMed:22410790, ECO:0000269|PubMed:23624715}. | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis (PubMed:18540109). BBX25/STH and BBX24/STO function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX25/STH acts additively with BBX24/STO during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). {ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:23624715}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak before dawn. {ECO:0000269|PubMed:17605755}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023876761.1 | 1e-174 | B-box zinc finger protein 24-like | ||||
Refseq | XP_023916825.1 | 1e-174 | B-box zinc finger protein 24-like | ||||
Swissprot | Q96288 | 1e-101 | BBX24_ARATH; B-box zinc finger protein 24 | ||||
Swissprot | Q9SID1 | 1e-101 | BBX25_ARATH; B-box zinc finger protein 25 | ||||
TrEMBL | A0A2I4G7W1 | 1e-149 | A0A2I4G7W1_JUGRE; B-box zinc finger protein 24-like | ||||
STRING | XP_006478724.1 | 1e-140 | (Citrus sinensis) | ||||
STRING | XP_006442999.1 | 1e-140 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3438 | 31 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G31380.1 | 1e-103 | salt tolerance homologue |
Publications ? help Back to Top | |||
---|---|---|---|
|