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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
maker-scaffold00006-snap-gene-2.47-mRNA-1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family |
Trihelix |
Protein Properties |
Length: 614aa MW: 68105 Da PI: 6.0402 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
maker-scaffold00006-snap-gene-2.47-mRNA-1 | genome | THGP | View Nucleic Acid |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 92 | 6.1e-29 | 65 | 149 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68
rW++qe+laL+++r++m+ ++++++ k+plWe+vs+k++e g++rs+k+Ckek+en+ k++k++keg+
maker-scaffold00006-snap-gene-2.47-mRNA-1 65 RWPRQETLALLKIRSDMDVAFKDASVKGPLWEDVSRKLAELGYNRSAKKCKEKFENVYKYHKRTKEGR 132
8******************************************************************* PP
trihelix 69 kkrtsessstcpyfdqlea 87
++ ++ +++++fdqlea
maker-scaffold00006-snap-gene-2.47-mRNA-1 133 TGK--PDGKNYRFFDQLEA 149
*95..77789*******85 PP
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2 | trihelix | 102.6 | 2.9e-32 | 437 | 522 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68
rW+k ev+aLi++r++++ +++++ k+plWee+s +mr+ g++rs+k+Ckekwen+nk++kk+ke++
maker-scaffold00006-snap-gene-2.47-mRNA-1 437 RWPKVEVQALIKLRTSLDAKYQENGPKGPLWEEISLAMRKLGYNRSSKRCKEKWENINKYFKKVKESN 504
8******************************************************************* PP
trihelix 69 kkrtsessstcpyfdqlea 87
kkr +e+ +tcpyf+ql+a
maker-scaffold00006-snap-gene-2.47-mRNA-1 505 KKR-PEDAKTCPYFHQLDA 522
**8.99999********85 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0010192 | Biological Process | mucilage biosynthetic process |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 614 aa
Download sequence Send
to blast |
MLAGDSSSSV LGSSADAVAS VATTSAHDVS AAAAEVGGGL GGSTSGEDDK GRGDELSDRS 60 FGGNRWPRQE TLALLKIRSD MDVAFKDASV KGPLWEDVSR KLAELGYNRS AKKCKEKFEN 120 VYKYHKRTKE GRTGKPDGKN YRFFDQLEAF EHHPQIQSPT PPKPPTLTST LAMPLPNLPS 180 IAHQVTVTSA TLHTANVSQG QANIVTQPVI NATTIPSLPP TNPTNTIFPP PPIPQPIAAA 240 AATTTNPSQP TIPSLQNISA DLISNSTDSS STSSDEQLED RRKKKRKWKD FFERLMKEVI 300 EKQEELQKRF LDAIEKRERD RMVREEAWRA QEMTRINRER EILAQERSIA AAKDAAVMAF 360 LQKISEQQNP GQQPHNNLPP PQPTATQPQP QPQPAPLPLP QPVAPAPSTA APHAIVTTLE 420 IHKNDNGGNF TPTSSSRWPK VEVQALIKLR TSLDAKYQEN GPKGPLWEEI SLAMRKLGYN 480 RSSKRCKEKW ENINKYFKKV KESNKKRPED AKTCPYFHQL DALYREKNRY EISPSSQVKP 540 ENSNMVPLMV RPEQQWPPQQ SDAVMEDVES EPMDQNQEEE DDDDDKDGDD EEEDEGGGHY 600 EIVASKPSSM GAAS
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 280 | 285 | RRKKKR |
2 | 280 | 286 | RRKKKRK |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB610110 | 1e-172 | AB610110.1 Castanea crenata mRNA, microsatellite: PRB123, complete sequence. |