PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00005-snap-gene-2.50-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB_related
Protein Properties Length: 444aa    MW: 49271.1 Da    PI: 6.5117
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00005-snap-gene-2.50-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.2e-173680147
                                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                               r +WT+eE++++++a k++G g W+ I +++g ++t+ q++s+ qk+
  maker-scaffold00005-snap-gene-2.50-mRNA-1 36 REKWTEEEHQKFLEALKLYGRG-WRQIEAHVG-TKTAVQIRSHAQKF 80
                                               789*******************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.83E-163084IPR009057Homeodomain-like
PROSITE profilePS5129421.3943185IPR017930Myb domain
TIGRFAMsTIGR015572.1E-163483IPR006447Myb domain, plants
SMARTSM007174.2E-133583IPR001005SANT/Myb domain
PfamPF002491.1E-143679IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.8E-103676IPR009057Homeodomain-like
CDDcd001675.29E-113881No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MVPRGQNDLT TSNADNYHPD GSVTKVRKPY TITKQREKWT EEEHQKFLEA LKLYGRGWRQ  60
IEAHVGTKTA VQIRSHAQKF FSKVVRASSS STESSIEPVE IPPPRPKRKP LHPYPRKLVD  120
SLHEISVADQ SERSPSPNSL VAEKDTESPT SVFSAVGSDA LGSAVSEQHN VCPSPVSCTT  180
DMHSISLATV EKENEHMMAN SSVQEEKKFE SASKETLSTD GDEAMGATIS SIKLFGRIVL  240
VTDSQKPCSP SAENIDSPTS KTILGNLDID TEKLPETLPS NQLDTHLSLE IVNCDWRLLP  300
CRAPVQCVEH QKENTNSAEA NPYASLPWLA LYQGLPYYHL PSYNQTSVQI PTYSCVEERT  360
KERDILKEKS CSGSNSVSAS EVKNEGKNLE AVDSQFQETK ARIKPCKSMK GFAPYKRCLA  420
ERDANSSVIA LEEREGQRAR VCSY
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in phytochrome A-mediated cotyledon opening. Controlled by the central oscillator mediated by LHY and CCA1. Part of a regulatory circadian feedback loop. Regulates its own expression. {ECO:0000269|PubMed:14523250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Up-regulated transiently by red light and far red light. {ECO:0000269|PubMed:14523250, ECO:0000269|PubMed:19805390}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023896813.10.0protein REVEILLE 7-like isoform X2
SwissprotB3H5A82e-56RVE7_ARATH; Protein REVEILLE 7
TrEMBLA0A2N9EYB60.0A0A2N9EYB6_FAGSY; Uncharacterized protein
STRINGEOY215701e-147(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73133244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.13e-53MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]